View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9993_low_9 (Length: 343)
Name: NF9993_low_9
Description: NF9993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9993_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 50151537 - 50151765
Alignment:
| Q |
2 |
tgaaattttaattaccctctcaatactcacaacacaagcgacaaactcaaggttgtgctaccatagagggttatatctctgttttctatggctttttgtt |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50151537 |
tgaaattttaattaccctctcaatactcacaacacaagtgacaaactcaaggttgtgctaccatagagggttatatctctgttttctatggctttatgtt |
50151636 |
T |
|
| Q |
102 |
atcattttggcacatgcttggtaatatggtaagc-ttttttgagttttgaattttctcactctaaaagaaacgatgaaacttgctttagccttgcaaatg |
200 |
Q |
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| T |
50151637 |
aacattttggcacatgcttggtaatatggtaagctttttttgagttttgaattttctcactctaaaagaaacgatgaaacttgctttagccttgcaaatg |
50151736 |
T |
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| Q |
201 |
gtgtttctataatatagagaagtagtggc |
229 |
Q |
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| T |
50151737 |
gcgtttctataatatagagaagtagtggc |
50151765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 75 - 229
Target Start/End: Original strand, 43013041 - 43013196
Alignment:
| Q |
75 |
tatctctgttttctatggctttttgttatcattttggcacatgcttggtaatatggtaagctttt-ttgagttttgaattttctcactctaaaagaaacg |
173 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43013041 |
tatctctgttttctatggctttttgttatcattttggcacatgcttggtaatatggtaagctttttttgagttttgaattttctcactctaaaagaaacg |
43013140 |
T |
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| Q |
174 |
atgaaacttgctttagccttgcaaatggtgtttctataatatagagaagtagtggc |
229 |
Q |
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| T |
43013141 |
atgaaacttgctttagccttgcaaatggcgtttctataatatagagaagtagtggc |
43013196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 113 - 226
Target Start/End: Original strand, 14998707 - 14998822
Alignment:
| Q |
113 |
acatgcttggtaatatggtaagcttt-tttgagttttgaattttctcactctaaaagaaacgatgaaa-cttgctttagccttgcaaatggtgtttctat |
210 |
Q |
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|||||| ||||||||||| | ||||| ||||||||||||||||| ||| | |||||||||| |||||| ||||||| ||||||||||||||||||||||| |
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| T |
14998707 |
acatgcgtggtaatatggcaggctttctttgagttttgaattttttcattgtaaaagaaaccatgaaaacttgcttcagccttgcaaatggtgtttctat |
14998806 |
T |
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| Q |
211 |
aatatagagaagtagt |
226 |
Q |
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|||| |||||||||| |
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| T |
14998807 |
gatatggagaagtagt |
14998822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 43012992 - 43013040
Alignment:
| Q |
1 |
gtgaaattttaattaccctctcaatactcacaacacaagcgacaaactc |
49 |
Q |
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| T |
43012992 |
gtgaaattttaattaccctctcaatactcacaacacaagtgacaaactc |
43013040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 34020865 - 34021095
Alignment:
| Q |
1 |
gtgaaattttaattaccctctcaatactcacaacacaagcgacaaactcaaggttgtgctaccatagagggttatatctctgttttctatggctttttgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34020865 |
gtgaaattttaattaccctctcaatactcacaacacaagtgacaaactcaaggttgtgctaccatagagggttatatctctgttttctatggctttgtgt |
34020964 |
T |
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| Q |
101 |
tatcattttggcacatgcttggtaatatggtaagc-ttttttgagttttgaattttctcactctaaaag-aaacgatgaaacttgctttagccttgcaaa |
198 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
34020965 |
tatcattttggcacatgcttggtaatatggtaagctttttttgagttttgaattttctcactctaaaagaaaaagatgaaacttgctttagccttgcaaa |
34021064 |
T |
|
| Q |
199 |
tggtgtttctataatatagagaagtagtggc |
229 |
Q |
| |
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||| ||||||||||||||||||||||||||| |
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| T |
34021065 |
tggcgtttctataatatagagaagtagtggc |
34021095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 11762269 - 11762474
Alignment:
| Q |
20 |
ctcaatactcacaacacaagcgacaaactcaaggttgtgctaccatagagggttatatctctgttttctatggcttttt---gttatcattttggcacat |
116 |
Q |
| |
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|||||||||||||||| ||| | | | ||||||||||||| | ||| |||||| ||||| |||||||||| ||||| |||||| ||||||||||| |
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| T |
11762269 |
ctcaatactcacaacaaaagtggccagctcaaggttgtgcagcaatatagggttgtatctttgttttctatttttttttctcgttatctttttggcacat |
11762368 |
T |
|
| Q |
117 |
gcttggtaatatggtaagcttt-tttgagttttgaattttctcactctaaaagaaacgatgaaacttgctttagccttgcaaatggtgtttctataatat |
215 |
Q |
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||||||||| | || ||||| ||||||| ||| |||||||| | |||||||||| |||||| |||||| |||||||||||||||||||| |||| |
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| T |
11762369 |
gcttggtaac--gataggctttctttgagtattgggttttctcattgtaaaagaaacaatgaaatttgcttccttcttgcaaatggtgtttctattatat |
11762466 |
T |
|
| Q |
216 |
agagaagt |
223 |
Q |
| |
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|||||||| |
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| T |
11762467 |
agagaagt |
11762474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 68 - 210
Target Start/End: Original strand, 14360509 - 14360650
Alignment:
| Q |
68 |
agggttatatctctgttttctatggctttttgttatcattttggcacatgcttggtaatatggta-agcttttttgagttttgaattttctcactct-aa |
165 |
Q |
| |
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|||||| ||||||| ||||||||| ||||||||||| |||||||||||| |||||| |||| | || || ||||||||||| ||||||||| | | || |
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| T |
14360509 |
agggttgtatctct-ttttctatgaatttttgttatctttttggcacatgtttggta--atggcagagtttctttgagttttggattttctcattgtaaa |
14360605 |
T |
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| Q |
166 |
aagaaacgatgaaacttgctttagccttgcaaatggtgtttctat |
210 |
Q |
| |
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|| |||| ||||||||||||| |||| || |||| |||||||||| |
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| T |
14360606 |
aaaaaactatgaaacttgcttcagccatggaaatcgtgtttctat |
14360650 |
T |
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