View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9994_low_1 (Length: 387)

Name: NF9994_low_1
Description: NF9994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9994_low_1
NF9994_low_1
[»] chr2 (15 HSPs)
chr2 (15-386)||(32211734-32212105)
chr2 (160-386)||(32157724-32157949)
chr2 (160-385)||(32110431-32110656)
chr2 (167-386)||(32156614-32156833)
chr2 (185-382)||(32174394-32174591)
chr2 (180-386)||(32206824-32207030)
chr2 (185-382)||(32118698-32118895)
chr2 (185-386)||(32182476-32182677)
chr2 (288-386)||(32152541-32152639)
chr2 (316-386)||(2821156-2821226)
chr2 (15-66)||(32534304-32534355)
chr2 (41-89)||(32174743-32174791)
chr2 (30-71)||(32158502-32158543)
chr2 (33-89)||(32182782-32182838)
chr2 (41-69)||(32206033-32206061)


Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 386
Target Start/End: Original strand, 32211734 - 32212105
Alignment:
Q  15 gagaagaagatgaaaatgaagaagttgttgataatggatacaataaggtatgtatttttctttaaatatatcattcaaagtttcatttatactgaaattc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32211734 gagaagaagatgaaaatgaagaagttgttgataatggatacaataaggtatgtatttttctttaaatatatcattcaaagttccatttatactgaaattc 32211833  T
Q  115 cagaggtttagaagaatatggcatgggtgaatctagctgctaaggactaatgtttgttgataatttttctacagatgacactttcgggactattgaatgc 214  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32211834 cataggtttagaagaatatggcatgggtgaatctagctgctaaggactaatgtttgttggtaatttttctacagatgacactttcgggactattgaatgc 32211933  T
Q  215 agtagatggcctttggtcgagctgtggagaagaacacataattgttttcacaacaaatcacaaagaaaggcttgatcctgctctattaaggcctggtaga 314  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32211934 agtagatggtctttggtcgtgctgtggagaagaacacataattgttgtcacaacaaatcacaaagaaaggcttgatcctgctctattaaggcctggtaga 32212033  T
Q  315 atggacaagcaaattcacttgtcatattgcaacttttctgcttttaagcaattggttattaactacctttgc 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32212034 atggacaagcaaattcacttgtcatattgcaacttttctgcttttaagcaattggttattaactacctttgc 32212105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 160 - 386
Target Start/End: Complemental strand, 32157949 - 32157724
Alignment:
Q  160 actaatgtttgttgataatttttctacagatgacactttcgggactattgaatgcagtagatggcctttggtcgagctgtggagaagaacacataattgt 259  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||   |||||| || |||||| |||||||||||||||||||||||||    
T  32157949 actaatgtttgt-gataatttttctacagatgacactttcgggactattgaatgcgacagatggtctctggtcgtgctgtggagaagaacacataattgt 32157851  T
Q  260 tttcacaacaaatcacaaagaaaggcttgatcctgctctattaaggcctggtagaatggacaagcaaattcacttgtcatattgcaacttttctgctttt 359  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32157850 tttcacaacaaatcacaaagacaggcttgatcctgctctattaaggcctggtagaatggacaagcaaattcacttgtcatattgcaacttttctgctttt 32157751  T
Q  360 aagcaattggttattaactacctttgc 386  Q
    ||| ||||||||| |||||||||||||    
T  32157750 aagaaattggttactaactacctttgc 32157724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 160 - 385
Target Start/End: Complemental strand, 32110656 - 32110431
Alignment:
Q  160 actaatgtttgttgataatttttctacagatgacactttcgggactattgaatgcagtagatggcctttggtcgagctgtggagaagaacacataattgt 259  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  32110656 actaatgtttgttgatactttttcaacagatgacactttcaggactattgaatgcagtagatggtctttggtcatgctgtggagaagaacacataattgt 32110557  T
Q  260 tttcacaacaaatcacaaagaaaggcttgatcctgctctattaaggcctggtagaatggacaagcaaattcacttgtcatattgcaacttttctgctttt 359  Q
    ||||||||||||||||||||| || ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32110556 tttcacaacaaatcacaaagacagacttgatcctgctctgctaaggcctggtagaatggacaagcaaattcacttgtcatattgcaacttttctgctttt 32110457  T
Q  360 aagcaattggttattaactacctttg 385  Q
    |||||||||||| |||||||||||||    
T  32110456 aagcaattggttgttaactacctttg 32110431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 167 - 386
Target Start/End: Complemental strand, 32156833 - 32156614
Alignment:
Q  167 tttgttgataatttttctacagatgacactttcgggactattgaatgcagtagatggcctttggtcgagctgtggagaagaacacataattgttttcaca 266  Q
    |||||| ||||||| || |||| |||||||||| ||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||    
T  32156833 tttgttcataatttgtcaacaggtgacactttcaggactattgaatgcagtagatggtctttggtcatgctgtggagaagaacacataattgttttcaca 32156734  T
Q  267 acaaatcacaaagaaaggcttgatcctgctctattaaggcctggtagaatggacaagcaaattcacttgtcatattgcaacttttctgcttttaagcaat 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||    
T  32156733 acaaatcacaaagaaaggcttgatcctgctctattaaggcctggtagaatagacaagcagattcacttgtcatattgcaacttttctgcttttaagaaat 32156634  T
Q  367 tggttattaactacctttgc 386  Q
    || |||||||||||||||||    
T  32156633 tgattattaactacctttgc 32156614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 185 - 382
Target Start/End: Complemental strand, 32174591 - 32174394
Alignment:
Q  185 acagatgacactttcgggactattgaatgcagtagatggcctttggtcgagctgtggagaagaacacataattgttttcacaacaaatcacaaagaaagg 284  Q
    |||| |||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  32174591 acaggtgacactttcaggactattgaatgcagtagatggtctttggtcgtgctgtggagaagaacacataattgtattcacaacaaatcacaaagacagg 32174492  T
Q  285 cttgatcctgctctattaaggcctggtagaatggacaagcaaattcacttgtcatattgcaacttttctgcttttaagcaattggttattaactacct 382  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  32174491 cttgatcctgctctgttaaggcctggtagaatggacaaacaaattcacttgtcatattgcaacttttctgcttttaagcaattggttgtcaactacct 32174394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 180 - 386
Target Start/End: Original strand, 32206824 - 32207030
Alignment:
Q  180 tttctacagatgacactttcgggactattgaatgcagtagatggcctttggtcgagctgtggagaagaacacataattgttttcacaacaaatcacaaag 279  Q
    |||| |||| |||||||||| ||||| ||||||||||||||||| ||||||||  ||||||||||||||||||||||||| |||||||||||||||||||    
T  32206824 tttcaacaggtgacactttcaggactgttgaatgcagtagatggtctttggtcatgctgtggagaagaacacataattgtattcacaacaaatcacaaag 32206923  T
Q  280 aaaggcttgatcctgctctattaaggcctggtagaatggacaagcaaattcacttgtcatattgcaacttttctgcttttaagcaattggttattaacta 379  Q
    | | |||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  32206924 acaagcttgatcctgctctgctaagacctggtagaatggacaagcaaattcacttgtcatattgcaacttttctgctttgaagcaattggttgttaacta 32207023  T
Q  380 cctttgc 386  Q
    |||||||    
T  32207024 cctttgc 32207030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 185 - 382
Target Start/End: Complemental strand, 32118895 - 32118698
Alignment:
Q  185 acagatgacactttcgggactattgaatgcagtagatggcctttggtcgagctgtggagaagaacacataattgttttcacaacaaatcacaaagaaagg 284  Q
    |||| |||||||||| |||||||||||||| || ||||| ||||||||  |||| |||||||||||||||||||| |||||||||||||||||||| |||    
T  32118895 acaggtgacactttcaggactattgaatgctgttgatggtctttggtcatgctgcggagaagaacacataattgtattcacaacaaatcacaaagacagg 32118796  T
Q  285 cttgatcctgctctattaaggcctggtagaatggacaagcaaattcacttgtcatattgcaacttttctgcttttaagcaattggttattaactacct 382  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32118795 cttgatcctgctctattaagacctggtagaatggacaagcacattcacttgtcatattgcaacttttctgcttttaagaaattggttattaactacct 32118698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 185 - 386
Target Start/End: Complemental strand, 32182677 - 32182476
Alignment:
Q  185 acagatgacactttcgggactattgaatgcagtagatggcctttggtcgagctgtggagaagaacacataattgttttcacaacaaatcacaaagaaagg 284  Q
    |||| |||||||||| ||||||||||||||   |||||| ||||||||  | |||||||| |||||||||||||||||||||||||||||||||||||||    
T  32182677 acaggtgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgttttcacaacaaatcacaaagaaagg 32182578  T
Q  285 cttgatcctgctctattaaggcctggtagaatggacaagcaaattcacttgtcatattgcaacttttctgcttttaagcaattggttattaactaccttt 384  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  32182577 cttgatcctgctctgctaaggcctggtagaatggacaagcaaattcacttgtcatattgcaacttttctggttttaagcaattggttgttaactaccttt 32182478  T
Q  385 gc 386  Q
    ||    
T  32182477 gc 32182476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 288 - 386
Target Start/End: Complemental strand, 32152639 - 32152541
Alignment:
Q  288 gatcctgctctattaaggcctggtagaatggacaagcaaattcacttgtcatattgcaacttttctgcttttaagcaattggttattaactacctttgc 386  Q
    |||| |||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32152639 gatcatgctctgttaaggcctggtaaaatggacaagcaaattcatttgtcatattgcaacttttctgcttttaagcaattggttgttaactacctttgc 32152541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 316 - 386
Target Start/End: Original strand, 2821156 - 2821226
Alignment:
Q  316 tggacaagcaaattcacttgtcatattgcaacttttctgcttttaagcaattggttattaactacctttgc 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821156 tggacaagcaaattcacttgtcatattgcaacttttctgcttttaagcaattggttattaactacctttgc 2821226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 32534355 - 32534304
Alignment:
Q  15 gagaagaagatgaaaatgaagaagttgttgataatggatacaataaggtatg 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32534355 gagaagaagatgaaaatgaagaagttgttgataatggatacaataaggtatg 32534304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 32174791 - 32174743
Alignment:
Q  41 gttgataatggatacaataaggtatgtatttttctttaaatatatcatt 89  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  32174791 gttgataatggatacaataaggtatatatttttcttcaaatatatcatt 32174743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 32158543 - 32158502
Alignment:
Q  30 atgaagaagttgttgataatggatacaataaggtatgtattt 71  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  32158543 atgaagaaattgttgataatggatacaataaggtatgtattt 32158502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 32182838 - 32182782
Alignment:
Q  33 aagaagttgttgataatggatacaataaggtatgtatttttctttaaatatatcatt 89  Q
    ||||||||||| |||||||| |||||||||||| |||||||||| ||||||| ||||    
T  32182838 aagaagttgttaataatggagacaataaggtatatatttttcttcaaatataccatt 32182782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 69
Target Start/End: Original strand, 32206033 - 32206061
Alignment:
Q  41 gttgataatggatacaataaggtatgtat 69  Q
    |||||||||||||||||||||||||||||    
T  32206033 gttgataatggatacaataaggtatgtat 32206061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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