View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9994_low_2 (Length: 295)
Name: NF9994_low_2
Description: NF9994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9994_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 49 - 288
Target Start/End: Original strand, 16280450 - 16280689
Alignment:
| Q |
49 |
gttttgaataaaattttaattccattcttcataaaataccgactctagagtattatttcatccctcccttttaaagacattcttccaaattaaggtgcac |
148 |
Q |
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| T |
16280450 |
gttttgaataaaattttaattccattcttcataaaataccgactctggagtattatttcatccctcccttttaaagacattcttccaaattaaggtgcac |
16280549 |
T |
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| Q |
149 |
aattttccttccaaccatttcttccattttctctaaaatcttatctcttttcctaactcccaacaaagtcagcctagagttcttattgcattttagctaa |
248 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
16280550 |
aattttccttccaaccatttctcccattttctctaaaatcttgtctcttttcctaactcccaacaaagtcagcctagagttctaattgtattttagctaa |
16280649 |
T |
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| Q |
249 |
gatagaatgtagcttatatgcaaaggaattgaaacacgaa |
288 |
Q |
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| T |
16280650 |
gatagaatgtagcttatatgcaaaggaattgaaacacgaa |
16280689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 74 - 177
Target Start/End: Complemental strand, 16332732 - 16332629
Alignment:
| Q |
74 |
tcttcataaaataccgactctagagtattatttcatccctcccttttaaagacattcttccaaattaaggtgcacaattttccttccaaccatttcttcc |
173 |
Q |
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|||| |||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
16332732 |
tctttataaaataccgactttagagtattatttcattcctcccttttaaagatattcttccaaattaaggtacacaattttccttccaaccatttcttcc |
16332633 |
T |
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| Q |
174 |
attt |
177 |
Q |
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|||| |
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| T |
16332632 |
attt |
16332629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 16279926 - 16279961
Alignment:
| Q |
18 |
tctattactatagttgtcatattgctgtcaagtttt |
53 |
Q |
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| T |
16279926 |
tctattactatagttgtcatattgctgtcaagtttt |
16279961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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