View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9994_low_4 (Length: 221)

Name: NF9994_low_4
Description: NF9994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9994_low_4
NF9994_low_4
[»] chr4 (16 HSPs)
chr4 (38-204)||(27489414-27489580)
chr4 (3-188)||(27523842-27524028)
chr4 (13-188)||(27476213-27476388)
chr4 (13-204)||(27468983-27469174)
chr4 (16-188)||(27514212-27514384)
chr4 (16-120)||(27508295-27508399)
chr4 (152-202)||(27473557-27473607)
chr4 (152-204)||(27466484-27466536)
chr4 (152-204)||(27526535-27526587)
chr4 (152-188)||(27503236-27503272)
chr4 (152-204)||(27508222-27508274)
chr4 (152-203)||(27517028-27517079)
chr4 (13-50)||(27557044-27557081)
chr4 (14-50)||(27497935-27497971)
chr4 (152-204)||(27498076-27498128)
chr4 (153-202)||(27557154-27557205)


Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 38 - 204
Target Start/End: Complemental strand, 27489580 - 27489414
Alignment:
Q  38 ccattctacatgtctgtggttgtaatttcaagtttatcaattatatgacgcttctgcacaagaattatgcattatctatctactacaccatttgaagtat 137  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27489580 ccattctacatgtctgtggttgtactttcaagtctatcaattatatgatgcttctgcacaagaattatgcattatctatctactacaccatttgaagtat 27489481  T
Q  138 atccattcatttcgagacaacaccatgtgatctttcatatgctcttgtctgaacatgactcaaatct 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27489480 atccattcatttcgagacaacaccatgtgatctttcatatgctcttgtctgaacatgactcaaatct 27489414  T

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Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 3 - 188
Target Start/End: Complemental strand, 27524028 - 27523842
Alignment:
Q  3 ctacatggctatggataacaattgatcaacagaaaccattctacatgtctgtggtt-gtaatttcaagtttatcaattatatgacgcttctgcacaagaa 101  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||| |||||||||||||| |||| ||||||||||    
T  27524028 ctacatggctatggataacaattgatcaacataaaccattctacatgtctgtggtttgtactttcaagtctatcaattatatgatgcttttgcacaagaa 27523929  T
Q  102 ttatgcattatctatctactacaccatttgaagtatatccattcatttcgagacaacaccatgtgatctttcatatgctcttgtctg 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27523928 ttatgcattatctatctactacaccatttgaagtatatccattcatttagagacaacaccatgtgatctttcatatgctcttgtctg 27523842  T

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Target: chr4; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 27476213 - 27476388
Alignment:
Q  13 atggataacaattgatcaacagaaaccattctacatgtctgtggttgtaatttcaagtttatcaattatatgacgcttctgcacaagaattatgcattat 112  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||||||||||    
T  27476213 atggataacaatagatcaacataaaccattctacatgtctgtggttgtactttcaagtctatcaattatatgatgcttctgctcaagaattatgcattat 27476312  T
Q  113 ctatctactacaccatttgaagtatatccattcatttcgagacaacaccatgtgatctttcatatgctcttgtctg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27476313 ctatctactacaccatttgaagtatatccattcatttcgagacaacaccatgtgatctttcatatgctcttgtctg 27476388  T

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Target: chr4; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 27468983 - 27469174
Alignment:
Q  13 atggataacaattgatcaacagaaaccattctacatgtctgtggttgtaatttcaagtttatcaattatatgacgcttctgcacaagaattatgcattat 112  Q
    |||||||||||| |||||||  |||||||||||||||||||||||| || |||||||| |||| || |||||| |||||| | |||||||||||||||||    
T  27468983 atggataacaatagatcaactcaaaccattctacatgtctgtggttctactttcaagtctatctatcatatgatgcttctactcaagaattatgcattat 27469082  T
Q  113 ctatctactacaccatttgaagtatatccattcatttcgagacaacaccatgtgatctttcatatgctcttgtctgaacatgactcaaatct 204  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||    
T  27469083 ctatctactacaccatttgaagtatatccattcatttagagacaacaccatgtgatctttcatatgctcttgtctggccatgactcatatct 27469174  T

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Target: chr4; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 27514384 - 27514212
Alignment:
Q  16 gataacaattgatcaacagaaaccattctacatgtctgtggttgtaatttcaagtttatcaattatatgacgcttctgcacaagaattatgcattatcta 115  Q
    |||||||||  | ||||| ||||||||||| |||| ||||| | || |||||||| |||||||||||||| |||| ||| ||||||||||||||||||||    
T  27514384 gataacaatataacaacataaaccattctatatgtttgtggctttactttcaagtctatcaattatatgatgcttatgctcaagaattatgcattatcta 27514285  T
Q  116 tctactacaccatttgaagtatatccattcatttcgagacaacaccatgtgatctttcatatgctcttgtctg 188  Q
    ||||||||| || ||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  27514284 tctactacaacacttgaagtttatccattcatctagagacaacaccatgtgatctttcatatgctcttgtctg 27514212  T

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Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 27508399 - 27508295
Alignment:
Q  16 gataacaattgatcaacagaaaccattctacatgtctgtggttgtaatttcaagtttatcaattatatgacgcttctgcacaagaattatgcattatcta 115  Q
    ||||||||| ||||||||||||||||||||||||| ||||||| || || ||||| |||||||||||||| |||||| | ||||||||||||||||||||    
T  27508399 gataacaatagatcaacagaaaccattctacatgtttgtggttctacttacaagtctatcaattatatgatgcttcttctcaagaattatgcattatcta 27508300  T
Q  116 tctac 120  Q
     ||||    
T  27508299 gctac 27508295  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 152 - 202
Target Start/End: Original strand, 27473557 - 27473607
Alignment:
Q  152 agacaacaccatgtgatctttcatatgctcttgtctgaacatgactcaaat 202  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27473557 agacaacaccatgtgatgtttcatatgctcttgtctgaacatgactcaaat 27473607  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 27466484 - 27466536
Alignment:
Q  152 agacaacaccatgtgatctttcatatgctcttgtctgaacatgactcaaatct 204  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  27466484 agacaacaccatgtgatgtttcatatgctcttgtctgaccatgactcaaatct 27466536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 27526587 - 27526535
Alignment:
Q  152 agacaacaccatgtgatctttcatatgctcttgtctgaacatgactcaaatct 204  Q
    |||||||||||||||||| ||||||||||||||||| | ||||||||||||||    
T  27526587 agacaacaccatgtgatcattcatatgctcttgtctaaccatgactcaaatct 27526535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 27503272 - 27503236
Alignment:
Q  152 agacaacaccatgtgatctttcatatgctcttgtctg 188  Q
    |||||||||||||||||||||||||||| ||||||||    
T  27503272 agacaacaccatgtgatctttcatatgcccttgtctg 27503236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 27508274 - 27508222
Alignment:
Q  152 agacaacaccatgtgatctttcatatgctcttgtctgaacatgactcaaatct 204  Q
    ||||||| |||||||||||||||||||| ||||||||  ||||||||| ||||    
T  27508274 agacaactccatgtgatctttcatatgcccttgtctgggcatgactcatatct 27508222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 27517079 - 27517028
Alignment:
Q  152 agacaacaccatgtgatctttcatatgctcttgtctgaacatgactcaaatc 203  Q
    ||||||||||||||||  ||||||||||| |||||||||||| |||| ||||    
T  27517079 agacaacaccatgtgacgtttcatatgctgttgtctgaacataactctaatc 27517028  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 27557044 - 27557081
Alignment:
Q  13 atggataacaattgatcaacagaaaccattctacatgt 50  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  27557044 atggataacaatagatcaacataaaccattctacatgt 27557081  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 27497935 - 27497971
Alignment:
Q  14 tggataacaattgatcaacagaaaccattctacatgt 50  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  27497935 tggataacaatagatcaacataaaccattctacatgt 27497971  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 27498076 - 27498128
Alignment:
Q  152 agacaacaccatgtgatctttcatatgctcttgtctgaacatgactcaaatct 204  Q
    |||||||||||||||||  |||||||||| |||||| | || |||||||||||    
T  27498076 agacaacaccatgtgattattcatatgcttttgtctaaccacgactcaaatct 27498128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 27557154 - 27557205
Alignment:
Q  153 gacaacaccatgtgatct--ttcatatgctcttgtctgaacatgactcaaat 202  Q
    ||||||||||||||||||  ||||||||||||||||||  ||| ||||||||    
T  27557154 gacaacaccatgtgatctgattcatatgctcttgtctggccataactcaaat 27557205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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