View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9994_low_5 (Length: 220)

Name: NF9994_low_5
Description: NF9994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9994_low_5
NF9994_low_5
[»] chr2 (2 HSPs)
chr2 (18-200)||(25971841-25972023)
chr2 (18-208)||(20425409-20425599)
[»] chr7 (3 HSPs)
chr7 (18-200)||(20937642-20937824)
chr7 (18-191)||(10609158-10609331)
chr7 (84-203)||(9016134-9016252)
[»] chr1 (2 HSPs)
chr1 (18-200)||(22523631-22523813)
chr1 (24-164)||(21463837-21463977)
[»] chr4 (2 HSPs)
chr4 (18-164)||(20374770-20374916)
chr4 (130-173)||(18026287-18026330)
[»] chr8 (1 HSPs)
chr8 (18-173)||(17832580-17832735)
[»] chr3 (1 HSPs)
chr3 (130-173)||(14675061-14675104)
[»] chr6 (1 HSPs)
chr6 (91-173)||(19323856-19323938)


Alignment Details
Target: chr2 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 25972023 - 25971841
Alignment:
Q  18 ttggggttggcttggctctagactcaattgtgttgtggatacttcttcctttgctgctcttatgtcttgtagaccagcaagctgctcttctcaagtggcg 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  25972023 ttggggttggcttggctctagactcaattgtgttgtggatacatcttcctttgctgctcttttgtcttgtagaccagcaagctgctcctctcaagtggcg 25971924  T
Q  118 gacatacatctcgcagcaatcttgcatactcttcattctatttggtgcactcgcaactcaatccggttttctttcttagcgcc 200  Q
    || ||| |||| |||||||| ||||||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||    
T  25971923 gaaatatatctagcagcaatattgcatactcttcatactatttggtgcgctcgcaactccatccggttttcattcttagcgcc 25971841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 20425409 - 20425599
Alignment:
Q  18 ttggggttggcttggctctagactcaattgtgttgtggatacttcttcctttgctgctcttatgtcttgtagaccagcaagctgctcttctcaagtggcg 117  Q
    ||||| |||| |||||||||| || ||||||||||  ||||| |||||||||| | |||||||||| ||||||| |||||| ||||||||||||||||||    
T  20425409 ttgggattggattggctctaggctaaattgtgttgcagatacatcttcctttgattctcttatgtcatgtagactagcaagatgctcttctcaagtggcg 20425508  T
Q  118 gacatacatctcgcagcaatcttgcatactcttcattctatttggtgcactcgcaactcaatccggttttctttcttagcgccctctctgc 208  Q
    |||||| |||| ||||||||||||||||||||| ||  |||||||||  |||||||||| ||||| || ||||| |||| |||||| ||||    
T  20425509 gacatatatctagcagcaatcttgcatactcttaataatatttggtgtgctcgcaactctatccgtttctctttgttagagccctcactgc 20425599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 20937824 - 20937642
Alignment:
Q  18 ttggggttggcttggctctagactcaattgtgttgtggatacttcttcctttgctgctcttatgtcttgtagaccagcaagctgctcttctcaagtggcg 117  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||     
T  20937824 ttggggttggcttggctctagactcaattgtgttgtggatacatcttcatttgctgctcttttgtcttgtagaccagcaagctgctcctctcaagtggca 20937725  T
Q  118 gacatacatctcgcagcaatcttgcatactcttcattctatttggtgcactcgcaactcaatccggttttctttcttagcgcc 200  Q
    || ||  |||| |||||||| ||||||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||    
T  20937724 gaaatttatctagcagcaatattgcatactcttcatactatttggtgcgctcgcaactccatccggttttcattcttagcgcc 20937642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 10609331 - 10609158
Alignment:
Q  18 ttggggttggcttggctctagactcaattgtgttgtggatacttcttcctttgctgctcttatgtcttgtagaccagcaagctgctcttctcaagtggcg 117  Q
    ||||| |||| |||||||||| || ||||||||||| ||||| |||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||    
T  10609331 ttgggattggattggctctaggctaaattgtgttgtagatacatcttcctttgattctcttatgtcttgtagaccagcaagatgctcttctcaagtggcg 10609232  T
Q  118 gacatacatctcgcagcaatcttgcatactcttcattctatttggtgcactcgcaactcaatccggttttcttt 191  Q
    |||||| |||| ||||||||||||||||||||| ||  |||||||||  |||||||||| ||||  ||||||||    
T  10609231 gacatatatctagcagcaatcttgcatactcttaataatatttggtgtgctcgcaactccatccatttttcttt 10609158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 84 - 203
Target Start/End: Original strand, 9016134 - 9016252
Alignment:
Q  84 ttgtagaccagcaagctgctcttctcaagtggcggacatacatctcgcagcaatcttgcatactcttcattctatttggtgcactcgcaactcaatccgg 183  Q
    ||||||||||||||| ||||||||||||||||  |||||| || | |||||||||||||||||| || | | |||||||||  || ||||||| |||||     
T  9016134 ttgtagaccagcaagatgctcttctcaagtggtagacatatatttagcagcaatcttgcatactatt-aatatatttggtgtgcttgcaactccatccga 9016232  T
Q  184 ttttctttcttagcgccctc 203  Q
    |||||||| |||||||||||    
T  9016233 ttttctttgttagcgccctc 9016252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 22523813 - 22523631
Alignment:
Q  18 ttggggttggcttggctctagactcaattgtgttgtggatacttcttcctttgctgctcttatgtcttgtagaccagcaagctgctcttctcaagtggcg 117  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||| ||||||||||||| |||||||||||     
T  22523813 ttggggttggcttggctctagactcaattgtgttgtggatacatcttcatttgctgctcttttgtcttgtagatcagcaagctgctcctctcaagtggct 22523714  T
Q  118 gacatacatctcgcagcaatcttgcatactcttcattctatttggtgcactcgcaactcaatccggttttctttcttagcgcc 200  Q
    || ||  |||| |||||||| ||||||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||    
T  22523713 gaaatttatctagcagcaatattgcatactcttcatactatttggtgcgctcgcaactccatccggttttcattcttagcgcc 22523631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 21463837 - 21463977
Alignment:
Q  24 ttggcttggctctagactcaattgtgttgtggatacttcttcctttgctgctcttatgtcttgtagaccagcaagctgctcttctcaagtggcggacata 123  Q
    |||| |||||||||| || ||| ||||||| ||| | |||||||||| | | ||  |||||||| | ||||| |||||||| |||||||||||||||||     
T  21463837 ttggattggctctaggctgaatcgtgttgtcgatgcgtcttcctttgattccctgctgtcttgtcgtccagcgagctgctcctctcaagtggcggacatt 21463936  T
Q  124 catctcgcagcaatcttgcatactcttcattctatttggtg 164  Q
      | | ||||||||||||||||| |||||| ||||||||||    
T  21463937 tttttagcagcaatcttgcatacacttcatactatttggtg 21463977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 20374916 - 20374770
Alignment:
Q  18 ttggggttggcttggctctagactcaattgtgttgtggatacttcttcctttgctgctcttatgtcttgtagaccagcaagctgctcttctcaagtggcg 117  Q
    ||||| |||| |||||||||| |  ||||||||||  ||||| |||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||    
T  20374916 ttgggattggattggctctaggcaaaattgtgttgcagatacatcttcctttgatactcttatgtcttgtagaccagcaagatgctcttctcaagtggcg 20374817  T
Q  118 gacatacatctcgcagcaatcttgcatactcttcattctatttggtg 164  Q
    |||||| |||| ||||||||||||||||||||| ||  |||||||||    
T  20374816 gacatatatctagcagcaatcttgcatactcttaataatatttggtg 20374770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 173
Target Start/End: Complemental strand, 18026330 - 18026287
Alignment:
Q  130 gcagcaatcttgcatactcttcattctatttggtgcactcgcaa 173  Q
    |||||||||||||||||||||||||||||||||||  |||||||    
T  18026330 gcagcaatcttgcatactcttcattctatttggtgggctcgcaa 18026287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 17832580 - 17832735
Alignment:
Q  18 ttggggttggcttggctctagactcaattgtgttgtggatacttcttcctttgctgctcttatgtcttgtagaccagcaagctgctcttctcaagtggcg 117  Q
    ||||| |||| |||||||||| || ||| ||||||| ||  |||||||||||| | | ||  |||||||| | ||||| || ||||| || ||||||||     
T  17832580 ttgggattggattggctctaggctgaatcgtgttgttgacgcttcttcctttgattccctgctgtcttgtcgtccagcgagttgctcctcccaagtggcc 17832679  T
Q  118 gacatacatctcgcagcaatcttgcatactcttcattctatttggtgcactcgcaa 173  Q
    |||||   | | || ||||||||||||||||||||| ||||||||||  |||||||    
T  17832680 gacatttttttagccgcaatcttgcatactcttcatactatttggtgggctcgcaa 17832735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 173
Target Start/End: Complemental strand, 14675104 - 14675061
Alignment:
Q  130 gcagcaatcttgcatactcttcattctatttggtgcactcgcaa 173  Q
    |||||||||||||||||||||||||||||||||||  |||||||    
T  14675104 gcagcaatcttgcatactcttcattctatttggtgggctcgcaa 14675061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 173
Target Start/End: Original strand, 19323856 - 19323938
Alignment:
Q  91 ccagcaagctgctcttctcaagtggcggacatacatctcgcagcaatcttgcatactcttcattctatttggtgcactcgcaa 173  Q
    ||||| |||||||| |||||||||||||||||   | | ||| ||||||||||||| |||||| ||||||||||  |||||||    
T  19323856 ccagcgagctgctcctctcaagtggcggacatttttttagcaacaatcttgcatacacttcatactatttggtgggctcgcaa 19323938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University