View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9995_high_10 (Length: 332)

Name: NF9995_high_10
Description: NF9995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9995_high_10
NF9995_high_10
[»] chr4 (1 HSPs)
chr4 (16-326)||(56393511-56393820)
[»] chr1 (3 HSPs)
chr1 (16-326)||(27517748-27518058)
chr1 (241-300)||(8192134-8192193)
chr1 (72-150)||(8191965-8192043)
[»] chr2 (2 HSPs)
chr2 (37-326)||(40457486-40457775)
chr2 (70-300)||(40088576-40088806)
[»] chr7 (1 HSPs)
chr7 (70-300)||(4242136-4242366)
[»] scaffold0002 (1 HSPs)
scaffold0002 (241-300)||(495880-495939)
[»] chr3 (2 HSPs)
chr3 (241-300)||(8016998-8017057)
chr3 (70-150)||(8017148-8017228)


Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 326
Target Start/End: Original strand, 56393511 - 56393820
Alignment:
Q  16 catggtacaatcattaatagaatcatactcttgccataacctctgcaatttactaaagtaagtaataacagatccaccattttgttgagtagagattacc 115  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56393511 catggtacaatcattaatagcatcatactcttgccataacctctgcaatttactaaagtaagtaataacagatccaccattttgttgagtagagattacc 56393610  T
Q  116 tcacgatacaattgatatgctcttgatgcatcttggtttaccgaatacgtctccttcacggtttcccaaatttcctttgccatagccaagcgaatgaaga 215  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||    
T  56393611 -cacgatacaattgatatgctcttgatgcatcttggtttaccgaatacgtctccttcacagtttcccaaatttcctttgtcgtagccaagcgaatgaaga 56393709  T
Q  216 gggatctggtttctttggtaatagaatccagaagccaagacttgaccaagcagttttcatcttcccatgtttcatattcctcagatttctggtcttttgg 315  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  56393710 gggatctggtttctttggtcatagaatccagaagccaagacttgaccaagcagttttcatcttcccatgtttcatattcctcagatttctggtctattgg 56393809  T
Q  316 tgtagcctttg 326  Q
    |||||||||||    
T  56393810 tgtagcctttg 56393820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 326
Target Start/End: Original strand, 27517748 - 27518058
Alignment:
Q  16 catggtacaatcattaatagaatcatactcttgccataacctctgcaatttactaaagtaagtaataacagatccaccattttgttgagtagagattacc 115  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27517748 catggtacaatcattaatagcatcatactcttgccataacctctgcaatttactaaagtaagtaataacagatccaccattttgttgagtagagattacc 27517847  T
Q  116 tcacgatacaattgatatgctcttgatgcatcttggtttaccgaatacgtctccttcacggtttcccaaatttcctttgccatagccaagcgaatgaaga 215  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  27517848 tcacgatacaattgatatgctcttgatgcatcttggtttactgaatacgtctccttcacggtttcccaaatttcctttgtcgtagccaagcgaatgaaga 27517947  T
Q  216 gggatctggtttctttggtaatagaatccagaagccaagacttgaccaagcagttttcatcttcccatgtttcatattcctcagatttctggtcttttgg 315  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||    
T  27517948 gggatctagtttctttggtcatagaatccagaagccaagacttgaccaagcagttttcatcttcccatgtttcatactcctcagatttttagtcttttgg 27518047  T
Q  316 tgtagcctttg 326  Q
    |||||||||||    
T  27518048 tgtagcctttg 27518058  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 8192134 - 8192193
Alignment:
Q  241 atccagaagccaagacttgaccaagcagttttcatcttcccatgtttcatattcctcaga 300  Q
    |||||||||||||||||||||||| || || ||||||||||| ||||||||||| |||||    
T  8192134 atccagaagccaagacttgaccaaacaattctcatcttcccaagtttcatattcatcaga 8192193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 8191965 - 8192043
Alignment:
Q  72 agtaagtaataacagatccaccattttgttgagtagagattacctcacgatacaattgatatgctcttgatgcatcttg 150  Q
    ||||||||| ||| |||||||||| ||||| | |||| |||||||||| ||| |  ||||||||  |||||||||||||    
T  8191965 agtaagtaacaacggatccaccatcttgtttaatagatattacctcacaataaagctgatatgcctttgatgcatcttg 8192043  T

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Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 37 - 326
Target Start/End: Original strand, 40457486 - 40457775
Alignment:
Q  37 atcatactcttgccataacctctgcaatttactaaagtaagtaataacagatccaccattttgttgagtagagattacctcacgatacaattgatatgct 136  Q
    ||||||||||||||| ||||| |  ||||| | ||| ||  |||| | ||| ||||||||||| |||||||| |||| |||||| || |||||||||||     
T  40457486 atcatactcttgccacaacctttttaattttccaaaatatataatcatagaaccaccattttgatgagtagaaattatctcacggtataattgatatgcc 40457585  T
Q  137 cttgatgcatcttggtttaccgaatacgtctccttcacggtttcccaaatttcctttgccatagccaagcgaatgaagagggatctggtttctttggtaa 236  Q
    || |||||||||||||| || |||||||||||||| | ||| ||||| |||||||| ||| ||||||| ||||| ||||| |||||| | |||||||| |    
T  40457586 ctagatgcatcttggttgactgaatacgtctccttgatggtgtcccatatttccttcgccgtagccaaacgaataaagagtgatctgatgtctttggtca 40457685  T
Q  237 tagaatccagaagccaagacttgaccaagcagttttcatcttcccatgtttcatattcctcagatttctggtcttttggtgtagcctttg 326  Q
    |||| || |||||||| ||||| ||||| ||||||||||| |||||||||||||| |||||  ||||||  |||||||||| ||||||||    
T  40457686 tagagtcaagaagccatgacttaaccaaacagttttcatcctcccatgtttcatactcctcgaatttctcatcttttggtgcagcctttg 40457775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 300
Target Start/End: Complemental strand, 40088806 - 40088576
Alignment:
Q  70 aaagtaagtaataacagatccaccattttgttgagtagagattacctcacgatacaattgatatgctcttgatgcatcttggtttaccgaatacgtctcc 169  Q
    ||||||||||| ||| |||||||||| ||||| | |||| |||||||||| ||| |  ||||||||  |||||||||||||  | || || || ||||||    
T  40088806 aaagtaagtaacaacggatccaccatcttgtttaatagatattacctcacaataaagctgatatgcctttgatgcatcttgactgacagagtaagtctcc 40088707  T
Q  170 ttcacggtttcccaaatttcctttgccatagccaagcgaatgaagagggatctggtttctttggtaatagaatccagaagccaagacttgaccaagcagt 269  Q
    || || | |||||| || | ||| ||  |||  || || ||||| || || ||    ||||| || || | |||||||||||||||||||||||| || |    
T  40088706 ttgaccgattcccagatcttcttggctgtaggtaaccggatgaaaagcgacctaacatcttttgtcattgcatccagaagccaagacttgaccaaacaat 40088607  T
Q  270 tttcatcttcccatgtttcatattcctcaga 300  Q
    | ||||||||||| ||||||||||| |||||    
T  40088606 tctcatcttcccaagtttcatattcatcaga 40088576  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 300
Target Start/End: Complemental strand, 4242366 - 4242136
Alignment:
Q  70 aaagtaagtaataacagatccaccattttgttgagtagagattacctcacgatacaattgatatgctcttgatgcatcttggtttaccgaatacgtctcc 169  Q
    ||||||||||| ||| |||||||||| ||||| | |||| |||||||||| ||| |  ||||||||  |||||||||||||  | || || || ||||||    
T  4242366 aaagtaagtaacaacggatccaccatcttgtttaatagatattacctcacaataaagctgatatgcctttgatgcatcttgactgacagagtaagtctcc 4242267  T
Q  170 ttcacggtttcccaaatttcctttgccatagccaagcgaatgaagagggatctggtttctttggtaatagaatccagaagccaagacttgaccaagcagt 269  Q
    || || | |||||| || | ||| ||  |||  || || ||||| || || ||    ||||| || || | |||||||||||||||||||||||| || |    
T  4242266 ttgaccgattcccagatcttcttggctgtaggtaaccggatgaaaagcgacctaacatcttttgtcattgcatccagaagccaagacttgaccaaacaat 4242167  T
Q  270 tttcatcttcccatgtttcatattcctcaga 300  Q
    | ||||||||||| ||||||||||| |||||    
T  4242166 tctcatcttcccaagtttcatattcatcaga 4242136  T

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Target: scaffold0002 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 495939 - 495880
Alignment:
Q  241 atccagaagccaagacttgaccaagcagttttcatcttcccatgtttcatattcctcaga 300  Q
    |||||||||||||||||||||||| || || ||||||||||| ||||||||||| |||||    
T  495939 atccagaagccaagacttgaccaaacaattctcatcttcccaagtttcatattcatcaga 495880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 8017057 - 8016998
Alignment:
Q  241 atccagaagccaagacttgaccaagcagttttcatcttcccatgtttcatattcctcaga 300  Q
    |||||||||||||||||||||||| || || ||||||||||| ||||||||||| |||||    
T  8017057 atccagaagccaagacttgaccaaacaattctcatcttcccaagtttcatattcatcaga 8016998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 8017228 - 8017148
Alignment:
Q  70 aaagtaagtaataacagatccaccattttgttgagtagagattacctcacgatacaattgatatgctcttgatgcatcttg 150  Q
    ||||||||||| ||| |||||||||| ||||| | |||| |||||||||| ||| |  ||||||||  |||||||||||||    
T  8017228 aaagtaagtaacaacggatccaccatcttgtttaatagatattacctcacaataaagctgatatgcctttgatgcatcttg 8017148  T

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