View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9995_high_12 (Length: 307)

Name: NF9995_high_12
Description: NF9995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9995_high_12
NF9995_high_12
[»] chr3 (19 HSPs)
chr3 (20-301)||(28044182-28044463)
chr3 (46-173)||(28516164-28516291)
chr3 (178-294)||(28474983-28475100)
chr3 (174-294)||(28516001-28516124)
chr3 (175-294)||(28127217-28127337)
chr3 (175-294)||(28141148-28141268)
chr3 (53-173)||(11405969-11406087)
chr3 (110-173)||(28175462-28175525)
chr3 (213-294)||(27960463-27960543)
chr3 (112-173)||(28099657-28099718)
chr3 (59-108)||(28475113-28475162)
chr3 (132-173)||(28500606-28500647)
chr3 (112-168)||(28045082-28045138)
chr3 (108-146)||(27995812-27995850)
chr3 (252-294)||(27995975-27996017)
chr3 (237-294)||(28099777-28099834)
chr3 (104-156)||(27957123-27957175)
chr3 (110-150)||(28076856-28076896)
chr3 (110-150)||(28156373-28156413)
[»] scaffold0067 (1 HSPs)
scaffold0067 (53-173)||(21140-21258)
[»] chr4 (2 HSPs)
chr4 (102-154)||(9386664-9386716)
chr4 (104-154)||(9332881-9332931)
[»] chr7 (1 HSPs)
chr7 (212-289)||(8697208-8697283)


Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 301
Target Start/End: Original strand, 28044182 - 28044463
Alignment:
Q  20 taaataacagagttcgatatccaccataaataatgatacatacattaacagtttaaagggtggctaatgcatagattgaatctataaatattattgccac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28044182 taaataacagagttcgatatccaccataaataatgatacatacattaacagtttaaagggtggctaatgcatagattgaatctataaatgttattgccac 28044281  T
Q  120 tgcagcttttgtttgctgcagaacatgaattgcagtgaatattactcctgattcgattgttagaaagtatgtgctgacaacagtaaaacattgaggtaga 219  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28044282 tgcagcttttgttttctgcagaacatgaattgcagtgaatattactcctgattcaattgttagaaagtatgtgctgacaacagtaaaacattgaggtaga 28044381  T
Q  220 aaacaatctcatgcttgtttttcttttgttactttcttagattttctatttgtatatgatttccattttcggtctgtgctcc 301  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28044382 aaacaatctcatgcttgtttttcttttgttactttctcagattttctatttgtatatgatttccattttcggtctgtgctcc 28044463  T

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Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 46 - 173
Target Start/End: Complemental strand, 28516291 - 28516164
Alignment:
Q  46 taaataatgatacatacattaacagtttaaagggtggctaatgcatagattgaatctataaatattattgccactgcagcttttgtttgctgcagaacat 145  Q
    |||| ||||||| ||| |||||||||||||| |||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||    
T  28516291 taaaaaatgatatataaattaacagtttaaaaggtggcaaatgcatagattgaatctttaaatgttaatgccactgcagcttttgtttgctgcagaacat 28516192  T
Q  146 gaattgcagtgaatattactcctgattc 173  Q
    ||||||||||||||||||||||||||||    
T  28516191 gaattgcagtgaatattactcctgattc 28516164  T

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Target: chr3; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 178 - 294
Target Start/End: Complemental strand, 28475100 - 28474983
Alignment:
Q  178 gttagaaagtatgtgctgacaacagtaaaac-attgaggtagaaaacaatctcatgcttgtttttcttttgttactttcttagattttctatttgtatat 276  Q
    |||| |||||||||||| ||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| ||||||    
T  28475100 gttaaaaagtatgtgcttacaacagtacaaccattgaggtagaaaacaatctcatggttgtttttcttttgttactttctcagattttttattggtatat 28475001  T
Q  277 gatttccattttcggtct 294  Q
    |||||||| ||| |||||    
T  28475000 gatttccaattttggtct 28474983  T

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Target: chr3; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 174 - 294
Target Start/End: Complemental strand, 28516124 - 28516001
Alignment:
Q  174 gattgttagaaagtatgtgctgacaacagtaaaac-attgaggtagaaaacaatctcatgcttgtttttcttttgtt--actttcttagattttctattt 270  Q
    |||||||| ||||||||||||||||||||||| || ||| |||||||||||||||||||| ||||||||||||| ||  |||||||  |||||||||||     
T  28516124 gattgttaaaaagtatgtgctgacaacagtaacaccatttaggtagaaaacaatctcatggttgtttttctttttttttactttctccgattttctattg 28516025  T
Q  271 gtatatgatttccattttcggtct 294  Q
    |||||||||||||| |||||||||    
T  28516024 gtatatgatttccaatttcggtct 28516001  T

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Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 175 - 294
Target Start/End: Original strand, 28127217 - 28127337
Alignment:
Q  175 attgttagaaagtatgtgctgacaacagtaaaaca-ttgaggtagaaaacaatctcatgcttgtttttcttttgttactttcttagattttctatttgta 273  Q
    ||||||| |||||| || || |||||||||| ||| ||||||||||||| ||||||||| ||||||||||||| | |||| || ||||||||||||||||    
T  28127217 attgttaaaaagtacgtccttacaacagtaacacaattgaggtagaaaataatctcatggttgtttttcttttatcacttcctcagattttctatttgta 28127316  T
Q  274 tatgatttccattttcggtct 294  Q
    ||||||||||| ||| |||||    
T  28127317 tatgatttccaattttggtct 28127337  T

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Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 175 - 294
Target Start/End: Original strand, 28141148 - 28141268
Alignment:
Q  175 attgttagaaagtatgtgctgacaacagtaaaaca-ttgaggtagaaaacaatctcatgcttgtttttcttttgttactttcttagattttctatttgta 273  Q
    ||||||| |||||| || || |||||||||| ||| ||||||||||||| ||||||||| ||||||||||||| | |||| || ||||||||||||||||    
T  28141148 attgttaaaaagtacgtccttacaacagtaacacaattgaggtagaaaataatctcatggttgtttttcttttatcacttcctcagattttctatttgta 28141247  T
Q  274 tatgatttccattttcggtct 294  Q
    ||||||||||| ||| |||||    
T  28141248 tatgatttccaattttggtct 28141268  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 173
Target Start/End: Original strand, 11405969 - 11406087
Alignment:
Q  53 tgatacatacattaacagtttaaagggtggctaatgcatagattgaatctataaatattattgccactgcagcttttgtttgctgcagaacatgaattgc 152  Q
    ||||| ||||||||||||||||  ||||||| |||||||| ||||||||||||||| |||||||| |||||| ||||| ||||||  | ||||||| |||    
T  11405969 tgatatatacattaacagttta--gggtggcaaatgcataaattgaatctataaatgttattgcctctgcagtttttgcttgctgtggtacatgaactgc 11406066  T
Q  153 agtgaatattactcctgattc 173  Q
    |||  |||| |||||| ||||    
T  11406067 agtagatataactcctaattc 11406087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 28175462 - 28175525
Alignment:
Q  110 ttattgccactgcagcttttgtttgctgcagaacatgaattgcagtgaatattactcctgattc 173  Q
    |||||| | ||||||||||||||||||||||||||||||||||| | | |||||||||| ||||    
T  28175462 ttattgactctgcagcttttgtttgctgcagaacatgaattgcaataactattactcctaattc 28175525  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 27960463 - 27960543
Alignment:
Q  213 aggtagaaaacaatctcatgcttgtttttcttttgttactttcttagattttctatttgtatatgatttccattttcggtct 294  Q
    |||||||| ||||||||||| |  ||| |||| |||||  |||| |||||||||||| ||||||||||||||||||||||||    
T  27960463 aggtagaatacaatctcatggta-tttctcttctgttatattctcagattttctattggtatatgatttccattttcggtct 27960543  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 28099657 - 28099718
Alignment:
Q  112 attgccactgcagcttttgtttgctgcagaacatgaattgcagtgaatattactcctgattc 173  Q
    |||||| |||||||||||||||| | |||||||||||||| ||| |||||||||||| ||||    
T  28099657 attgcccctgcagcttttgtttgttccagaacatgaattgaagtaaatattactcctaattc 28099718  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 28475162 - 28475113
Alignment:
Q  59 atacattaacagtttaaagggtggctaatgcatagattgaatctataaat 108  Q
    ||||| ||| |||||||||||||| |||||||||||||||||||||||||    
T  28475162 atacactaatagtttaaagggtggataatgcatagattgaatctataaat 28475113  T

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Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 28500647 - 28500606
Alignment:
Q  132 ttgctgcagaacatgaattgcagtgaatattactcctgattc 173  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  28500647 ttgctgcagaacatgaattgcagtgaatattactcctaattc 28500606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 28045082 - 28045138
Alignment:
Q  112 attgccactgcagcttttgtttgctgcagaacatgaattgcagtgaatattactcct 168  Q
    |||||| || || |||||||| ||||| |||||||||||| ||||||||||||||||    
T  28045082 attgcctctccatcttttgttagctgcggaacatgaattgtagtgaatattactcct 28045138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 27995812 - 27995850
Alignment:
Q  108 tattattgccactgcagcttttgtttgctgcagaacatg 146  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  27995812 tattattgcccctgcagcttttatttgctgcagaacatg 27995850  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 294
Target Start/End: Original strand, 27995975 - 27996017
Alignment:
Q  252 tttcttagattttctatttgtatatgatttccattttcggtct 294  Q
    ||||| |||||||||||  ||||||||||||||||||||||||    
T  27995975 tttctcagattttctatcggtatatgatttccattttcggtct 27996017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 28099777 - 28099834
Alignment:
Q  237 tttttcttttgttactttcttagattttctatttgtatatgatttccattttcggtct 294  Q
    |||||||| | ||| ||||| |||||||||||  || |||||||||||||||||||||    
T  28099777 tttttcttcttttattttctcagattttctatcggtgtatgatttccattttcggtct 28099834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 27957123 - 27957175
Alignment:
Q  104 taaatattattgccactgcagcttttgtttgctgcagaacatgaattgcagtg 156  Q
    ||||| |||||||| |||||  |||||||| |||||||| |||||||||||||    
T  27957123 taaatgttattgcctctgcaaattttgtttactgcagaatatgaattgcagtg 27957175  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 28076856 - 28076896
Alignment:
Q  110 ttattgccactgcagcttttgtttgctgcagaacatgaatt 150  Q
    |||||| | |||||||||||||||||||| |||||||||||    
T  28076856 ttattgactctgcagcttttgtttgctgcggaacatgaatt 28076896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 28156373 - 28156413
Alignment:
Q  110 ttattgccactgcagcttttgtttgctgcagaacatgaatt 150  Q
    |||||| | |||||||||||||||||||| |||||||||||    
T  28156373 ttattgactctgcagcttttgtttgctgcggaacatgaatt 28156413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 173
Target Start/End: Original strand, 21140 - 21258
Alignment:
Q  53 tgatacatacattaacagtttaaagggtggctaatgcatagattgaatctataaatattattgccactgcagcttttgtttgctgcagaacatgaattgc 152  Q
    ||||| ||||||||||||||||  ||||||| |||||||| ||||||||||||||| |||||||| |||||| ||||| ||||||  | ||||||| |||    
T  21140 tgatatatacattaacagttta--gggtggcaaatgcataaattgaatctataaatgttattgcctctgcagtttttgcttgctgtggtacatgaactgc 21237  T
Q  153 agtgaatattactcctgattc 173  Q
    |||  |||| |||||| ||||    
T  21238 agtagatataactcctaattc 21258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 9386716 - 9386664
Alignment:
Q  102 tataaatattattgccactgcagcttttgtttgctgcagaacatgaattgcag 154  Q
    ||||||| |||||||| |||||||||||||| ||||||| |||| ||||||||    
T  9386716 tataaatgttattgcctctgcagcttttgttcgctgcaggacataaattgcag 9386664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 9332931 - 9332881
Alignment:
Q  104 taaatattattgccactgcagcttttgtttgctgcagaacatgaattgcag 154  Q
    ||||| |||||||| |||||||||||||| ||||||| |||| ||||||||    
T  9332931 taaatgttattgcctctgcagcttttgttcgctgcaggacattaattgcag 9332881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 289
Target Start/End: Complemental strand, 8697283 - 8697208
Alignment:
Q  212 gaggtagaaaacaatctcatgcttgtttttcttttgttac--tttcttagattttctatttgtatatgatttccattttc 289  Q
    |||||||| ||||||||||||    ||||| |||||||||  |||||| |||||| |||| |||||||||||||||||||    
T  8697283 gaggtagagaacaatctcatg----ttttttttttgttacaatttctttgattttatattggtatatgatttccattttc 8697208  T

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