View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9995_high_13 (Length: 300)
Name: NF9995_high_13
Description: NF9995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9995_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 47477745 - 47477495
Alignment:
| Q |
1 |
ttttttgacaccgctgatgtttatggactcgatggtgggaatgaaattttggttggaaaggtatatacatattaataataactacaagaattggtacttt |
100 |
Q |
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| T |
47477745 |
ttttttgacaccgctgatgtttatggactcgatggtgggaatgaaattttggttggaaaggtatatacatattaataataactacaagaattggtacttt |
47477646 |
T |
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| Q |
101 |
gccaagaggtcctgggtttaaatccggacagacgagtaaatagtaatctcacaactaactaattagtaacatttatcattnnnnnnnntgccaagaattt |
200 |
Q |
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| T |
47477645 |
gccaagaggtcctgggtttaaatctggacagacgagtaaatagtaatctcacaactaactaactagtaacatttatcattaaaaaaaatgccaagaattt |
47477546 |
T |
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| Q |
201 |
cttttatgttctaaatttaataccgcaattg----ttatgccaatttgagc |
247 |
Q |
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| T |
47477545 |
cttttatgttctaaatttaataccgcaattgaaacttatgccaatttgagc |
47477495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 47486916 - 47486857
Alignment:
| Q |
4 |
tttgacaccgctgatgtttatggactcgatggtgggaatgaaattttggttggaaaggta |
63 |
Q |
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| T |
47486916 |
tttgatactgctgatgtttatggagtcgatggtggtaatgaaatattggttggaaaggta |
47486857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 2097125 - 2097181
Alignment:
| Q |
106 |
gaggtcctgggtttaaatccggacagacgagtaaatagtaatctcacaactaactaa |
162 |
Q |
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| T |
2097125 |
gaggtcctgggttcaaacccggacaagggagtaaatattaatctaacaactaactaa |
2097181 |
T |
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