View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9995_high_18 (Length: 227)
Name: NF9995_high_18
Description: NF9995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9995_high_18 |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 51759792 - 51760019
Alignment:
| Q |
1 |
tcacgagtaataggcctgaaatatagattaattaccaaacttcagctactcgagactctagttatgttattagaatttgaagacaataggaaaatttaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
51759792 |
tcacgagtaataggcctgaaatatagattaattaccaaacttcagctactcgagactctagttatgttattagaatttgaacacaatagg-aaatttaac |
51759890 |
T |
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| Q |
101 |
accaaatcttttatctaaaaga--aaggaaatttaataattaccattattcaaacggtgaagcattccatcaatttcggggtcagtctattcaatcaaac |
198 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| |||||| ||||||| |
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| T |
51759891 |
accaaatcttttatctaaaagaacaaggaaatttaataattaccattattcaaactgtgaagcattccaccaattctggggtcaacctattcgatcaaac |
51759990 |
T |
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| Q |
199 |
acaccaaaagaataagcaaagataattca |
227 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
51759991 |
acaccaaaagaataagcaaagataattca |
51760019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 6685199 - 6685283
Alignment:
| Q |
8 |
taataggcctgaaatatagattaattaccaaacttcagctactcgagactctagttatgttattagaatttgaagacaataggaa |
92 |
Q |
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| T |
6685199 |
taataggtctgaaataaagcttaattaccaaacttcagctactcgagactctagttatgttattagaatttgaacacaataggaa |
6685283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 17718708 - 17718637
Alignment:
| Q |
156 |
tgaagcattccatcaatttcggggtcagtctattcaatcaaacacaccaaaagaataagcaaagataattca |
227 |
Q |
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| T |
17718708 |
tgaagcattccaccaatcccaaggtcagcctattcaatcaaacacaccaaaagaataagcaaagataattca |
17718637 |
T |
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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 96 - 227
Target Start/End: Original strand, 15514593 - 15514725
Alignment:
| Q |
96 |
ttaacaccaaatcttttatctaaaagaa--aggaaatttaataattaccattattcaaacggtgaagcattccatcaatttcggggtcagtctattcaat |
193 |
Q |
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|||||| ||||| ||||||||||||||| || ||||||| ||||| |||||||||||| ||||||||||||| |||| || ||||| |||||||| |
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| T |
15514593 |
ttaacatcaaat-ttttatctaaaagaataagacaatttaaaaattaacattattcaaactgtgaagcattccaccaatcctggagtcagcttattcaat |
15514691 |
T |
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| Q |
194 |
caaacacaccaaaagaataagcaaagataattca |
227 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
15514692 |
caaatacaccaaaagaataagcaaagataattca |
15514725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 9241469 - 9241398
Alignment:
| Q |
156 |
tgaagcattccatcaatttcggggtcagtctattcaatcaaacacaccaaaagaataagcaaagataattca |
227 |
Q |
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|||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9241469 |
tgaagcattccaccaatcccggggtcagcctattcaatcaaacacaccaaaagaataagcaaagataattca |
9241398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 19747518 - 19747585
Alignment:
| Q |
109 |
ttttatctaaaaga--aaggaaatttaataattaccattattcaaacggtgaagcattccatcaattt |
174 |
Q |
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|||||||||||||| |||| ||||| | |||||||||||||||||| || ||||||||||||||||| |
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| T |
19747518 |
ttttatctaaaagagcaaggcaattttaaaattaccattattcaaactgtaaagcattccatcaattt |
19747585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 17038716 - 17038786
Alignment:
| Q |
155 |
gtgaagcattccatcaatttcggggtcagtctattcaatcaaacacaccaaaagaataagcaaagataatt |
225 |
Q |
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||||||||||||| |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
17038716 |
gtgaagcattccaccaatctcgggaacagcctattcaatcaaacacaccaaaagaataagcaaagataatt |
17038786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 23615559 - 23615512
Alignment:
| Q |
156 |
tgaagcattccatcaatttcggggtcagtctattcaatcaaacacacc |
203 |
Q |
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| T |
23615559 |
tgaagcattccaccaatcccggggtcagcctattcaatcaaacacacc |
23615512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 23846955 - 23846908
Alignment:
| Q |
156 |
tgaagcattccatcaatttcggggtcagtctattcaatcaaacacacc |
203 |
Q |
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| T |
23846955 |
tgaagcattccaccaatcccggggtcagcctattcaatcaaacacacc |
23846908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 45355508 - 45355460
Alignment:
| Q |
179 |
gtcagtctattcaatcaaacacaccaaaagaataagcaaagataattca |
227 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45355508 |
gtcagcctattcaatcaaacacaccaaaagaataagcaaagataattca |
45355460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 43600971 - 43601019
Alignment:
| Q |
179 |
gtcagtctattcaatcaaacacaccaaaagaataagcaaagataattca |
227 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43600971 |
gtcagcctattcaatcaaacacaccaaaagaataagcaaagataattca |
43601019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 2550870 - 2550918
Alignment:
| Q |
179 |
gtcagtctattcaatcaaacacaccaaaagaataagcaaagataattca |
227 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2550870 |
gtcagcctattcaatcaaacacaccaaaagaataagcaaagataattca |
2550918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 13846696 - 13846744
Alignment:
| Q |
179 |
gtcagtctattcaatcaaacacaccaaaagaataagcaaagataattca |
227 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13846696 |
gtcagcctattcaatcaaacacaccaaaagaataagcaaagataattca |
13846744 |
T |
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