View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9995_high_2 (Length: 637)
Name: NF9995_high_2
Description: NF9995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9995_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 1 - 621
Target Start/End: Complemental strand, 37810859 - 37810239
Alignment:
| Q |
1 |
tgagtaatttacataaggtactagggactgaagcaactcaagatcccacccggcttgaaaaggaagtacgtaatgcagctgctgagcgtgggcaggctca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
37810859 |
tgagtaatttacataaggtactagggactgaagcaactcaagatcccacccggcttgaaaaggaagtacgtaatgcagctgccgagcgtgagcaggctca |
37810760 |
T |
|
| Q |
101 |
catagataggaatattgcacgcaagcttactcctgctgagctgcgtgagaagaaggaaaggaaattgtttgatgacccaaatacattggacacacttgtc |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37810759 |
catagataggaatattgcacacaagcttactcctgctgagctgcgtgagaagaaggaaaggaagttgtttgatgacccaaatacattggacacacttgtc |
37810660 |
T |
|
| Q |
201 |
tcactttacagggtaaatgacctttctcatcacaaagcccgctttagagtttatgctaatgctcaagaaaatcgtttgactggatgtgcggtgattcgtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37810659 |
tcactttacagggtaaatgacctttctcatcacaaagcccgctttagagtttatgctaatgctcaagaaaatcgtttgactggatgtgcggtgatttgtg |
37810560 |
T |
|
| Q |
301 |
atggtattagcgttgtcgttgttgaaggtggaagcaagtcaattaagaggtatgggaaacttatgcttagacgtattaaatggtgtgatgtttcaaaaga |
400 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37810559 |
atggtattagcgttgtcgtggttgaaggtggaagcaagtcaattaagaggtatgggaaacttatgcttagacgtattaaatggcgtgatgtttcaaaaga |
37810460 |
T |
|
| Q |
401 |
gatagaagataatgaagattcaggctatgcctataaatgtgttctggtgtggcaaggaaatgttgccaaatcgagcttcaataggttcagtgttcattac |
500 |
Q |
| |
|
|| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37810459 |
gaaagaagataatgaagattcaggcgatgccaataaatgtgttctggtgtggcaaggaagtgttgccaaatcgagcttcaataggttcagtgttcatgac |
37810360 |
T |
|
| Q |
501 |
tgcatcactgaagcagctgctcgtaaagtttttgtggatgctggggttcctcattattgggaccaagctgtcaactatacagatgatgatgctgtttgaa |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37810359 |
tgcatcactgaagcagctgctcgtaaagtttttgtggatgctggggttcttcattattggtaccaagctgtcaactatacagatgatgatgctgtttgaa |
37810260 |
T |
|
| Q |
601 |
ttgtcctctaatgtttttggt |
621 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
37810259 |
ttgtcctctaatgtttttggt |
37810239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 621
Target Start/End: Complemental strand, 52352728 - 52352099
Alignment:
| Q |
1 |
tgagtaatttacataaggtactagggactgaagcaactcaagatcccacccggcttgaaaaggaagtacgtaatgcagctgctgagcgtgggcaggctca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
52352728 |
tgagtaatttacataaggtactagggactgaagcaactcaagatcccacccggcttgaaaaggaagtacgtaatgctgctgctgagcgtgagcaggctca |
52352629 |
T |
|
| Q |
101 |
catagataggaatattgcacgcaagcttactcctgctgagctgcgtgagaagaaggaaaggaaattgtttgatgacccaaatacattggacacacttgtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||| ||||||||||||||||| |
|
|
| T |
52352628 |
catagataggaatattgcacgcaagcttactcctgctgagctgcgtgagaagaaagaaaggaagctctttgatgacccaaattcattggacacacttgtc |
52352529 |
T |
|
| Q |
201 |
tcactttacagggtaaatgacctttctcatcacaaagcccgctttagagtttatgctaatgctcaagaaaatcgtttgactggatgtgcggtgattcgtg |
300 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
52352528 |
tcactttacagggtaaatgacctctctcatcccaaggcccgctttagagttgatgttaatgctcaagaaaatcgtttgactggatgtgctgtgatttgtg |
52352429 |
T |
|
| Q |
301 |
atggtattagcgttgtcgttgttgaaggtggaagcaagtcaattaagaggtatgggaaacttatgcttagacgtattaaatggtgtgatgtttcaaaaga |
400 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| | |||||||||||||| |
|
|
| T |
52352428 |
atggtattagcgttgttgtggttgaaggtggaagcaagtcaattaagaggtatgggaaacttatgcttagacgcatcaattggagcgatgtttcaaaaga |
52352329 |
T |
|
| Q |
401 |
gatagaagataatgaagattcaggctat-----gcct----ataaatgtgttctggtgtggcaaggaaatgttgccaaatcgagcttcaataggttcagt |
491 |
Q |
| |
|
|| ||||||| |||| ||||||| | || |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
52352328 |
gaaagaagatgatgaggattcagacgatgaaaagcctgcgaataaatgtgttctggtgtggcaaggaagtgttgccaaatcgagcttcaataggttcagt |
52352229 |
T |
|
| Q |
492 |
gttcattactgcatcactgaagcagctgctcgtaaagtttttgtggatgctggggttcctcattattgggaccaagctgtcaactatacagatgatgatg |
591 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| |
|
|
| T |
52352228 |
gttcatgactgcatcactgaagcagctgctcgtaaagtgtttgtggatgctggggttcctcattattgggaccaagctgtcaactatacggaggacgatg |
52352129 |
T |
|
| Q |
592 |
ctgtttgaattgtcctctaatgtttttggt |
621 |
Q |
| |
|
|||||||||||||| |||| |||||||||| |
|
|
| T |
52352128 |
ctgtttgaattgtcttctagtgtttttggt |
52352099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 17199562 - 17199198
Alignment:
| Q |
1 |
tgagtaatttacataaggtactagggactgaagcaactcaagatcccacccggcttgaaaaggaagtacgtaatgcagctgctgagcgtgggcaggctca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
17199562 |
tgagtaatttacataaggtactagggacagaagcgactcaagatcccacccggcttgaaaaggaagtacgtaatgcaactgctgagcgtgagcaggctca |
17199463 |
T |
|
| Q |
101 |
catagataggaatattgcacgcaagcttactcctgctgagctgcgtgagaagaaggaaaggaaattgtttgatgacccaaatacattggacacacttgtc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
17199462 |
catagataggaatattgcacgcaagcttactcctgctgagctgcgcgagaagaagaaaaggaaactgtttgatgagccaaatacattggacacacttgtc |
17199363 |
T |
|
| Q |
201 |
tcactttacagggtaaatgacctttctcatcacaaagcccgctttagagtttatgctaatgctcaagaaaatcgtttgactggatgtgcggtgattcgtg |
300 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
17199362 |
tcactttacagggtaaatggcctctctcatcccaatgcccgctttagagt---------tgctcaagaaaatcgtttgactggatgtgcggtaatttgtg |
17199272 |
T |
|
| Q |
301 |
atggtattagcgttgtcgttgttgaaggtggaagcaagtcaattaagaggtatgggaaacttatgcttagacgtat |
376 |
Q |
| |
|
|||| |||||| |||| || ||||||||||||||||||||||||||||| || |||||||||||||||| ||||| |
|
|
| T |
17199271 |
atggcattagcattgttgtggttgaaggtggaagcaagtcaattaagag--ataggaaacttatgcttagccgtat |
17199198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University