View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9995_high_8 (Length: 350)
Name: NF9995_high_8
Description: NF9995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9995_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 42973678 - 42973342
Alignment:
| Q |
1 |
ctcagagtcaatagtgagcatccccttatccaagcttctcaaattgagaaggatttattcatcatcatctctcatacatgtttagaagtactttcatatc |
100 |
Q |
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| T |
42973678 |
ctcagagtcaatagtgagcatccccttatccaagcttctcaaattgagaaggatttattgatcatcatctctcatacatgtttagaagtactttcatatc |
42973579 |
T |
|
| Q |
101 |
gaagactgcatagttgaggaaacaaaactcttaaaaggtgcaacaagctttagcatcctaactgctaagtagaacaatttctgaaaacatcagacaactc |
200 |
Q |
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| T |
42973578 |
gaagactgcatagttgaggaaacaaaactcttaaaaggtgcaacaagctttagcatcctaactgctaagtagaacaatttctgaaaacatcagacaactc |
42973479 |
T |
|
| Q |
201 |
gcttttcaagcttgcattttaaatttgatttaccatgtcagtgcataacaaataacctcaatgaaaaattacaatagaataatatatatatcgaatagat |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42973478 |
gcttttcaagtttgcattttaaatttgatttaccatgtcagtgcataacaaataacctcaatgaaaaattacaatagaataatatatatatcgaatagat |
42973379 |
T |
|
| Q |
301 |
gtattgacctatcggcaaagttgttttcattgtccct |
337 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
42973378 |
gtattggcctatcggcaaagttgttttcattgtccct |
42973342 |
T |
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