View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9995_high_9 (Length: 334)
Name: NF9995_high_9
Description: NF9995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9995_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 320
Target Start/End: Complemental strand, 31722035 - 31721726
Alignment:
| Q |
11 |
catagggatgagaagtccacgtaaggattggaagataagaacaagcccaaagctaagatggatgataagatcaccattgaaattgttgacaaaagtcaag |
110 |
Q |
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|||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31722035 |
cataaggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctaagatggatgataagatcaccattgaaattgttgacaaaagtcaag |
31721936 |
T |
|
| Q |
111 |
aatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacggattccaaaggctcgtc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31721935 |
aatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacggattccaaaggctcgtc |
31721836 |
T |
|
| Q |
211 |
aagtgtctaattctaaagtttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggttgcttcacatgaactatattccat |
310 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31721835 |
aagtgtctaattctaaaggttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggttgcttcacatgaactatattccat |
31721736 |
T |
|
| Q |
311 |
gtagtaattg |
320 |
Q |
| |
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|||||||||| |
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| T |
31721735 |
gtagtaattg |
31721726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 316
Target Start/End: Complemental strand, 31711329 - 31711024
Alignment:
| Q |
11 |
catagggatgagaagtccacgtaaggattggaagataagaacaagcccaaagctaagatggatgataagatcaccattgaaattgttgacaaaagtcaag |
110 |
Q |
| |
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|||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31711329 |
cataaggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctaagatggatgataagatcaccattgaaattgttgacaaaagtcaag |
31711230 |
T |
|
| Q |
111 |
aatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacggattccaaaggctcgtc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31711229 |
aatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggcctttaatactgataacaagtttggtatgaaacggattccaaaggctcgtc |
31711130 |
T |
|
| Q |
211 |
aagtgtctaattctaaagtttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggttgcttcacatgaactatattccat |
310 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31711129 |
aagtgtctaattctaaaggttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggtggcttcacatgaactatattccat |
31711030 |
T |
|
| Q |
311 |
gtagta |
316 |
Q |
| |
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|||||| |
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| T |
31711029 |
gtagta |
31711024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 313
Target Start/End: Complemental strand, 31719425 - 31719134
Alignment:
| Q |
16 |
ggatgagaagtccacgtaaggattggaagataagaacaagcccaaagctaagatggatgataagatcaccattgaaattgttgacaaaagtcaagaatac |
115 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31719425 |
ggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctaagatggatgataagatcaccattgaaattgttgacaaaagtcaagaatac |
31719326 |
T |
|
| Q |
116 |
gtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacggattccaaaggctcgtcaagtg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31719325 |
gtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacggattccaaaggctcgtcaagtg |
31719226 |
T |
|
| Q |
216 |
tctaattctaaagtttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggttgcttcacatgaactatattccatgta |
313 |
Q |
| |
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| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
31719225 |
t------ctaaaggttattctggtgatgcgtttgaggctaggcttatatttgagatttctaagaccttggtggcttcacatgaactatattctatgta |
31719134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 11 - 300
Target Start/End: Complemental strand, 31716484 - 31716214
Alignment:
| Q |
11 |
catagggatgagaagtccacgtaaggattggaagataagaacaagcccaaagctaagatggatgataagatcaccattgaaattgttgacaaaagtcaag |
110 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||| | |||||||| ||||| |
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| T |
31716484 |
catacggatgagaagtccacgtagggattggaagatcagaacaagtccaaagctaagatggatgataagat-------------ggtgacaaaaatcaag |
31716398 |
T |
|
| Q |
111 |
aatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacggattccaaaggctcgtc |
210 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
31716397 |
aatacttatatgaactttatgctgaagttggctggtaatgtaggaggggcattgaacactgataacaagtttggtgtgaaaaggattccaaaggctcgtc |
31716298 |
T |
|
| Q |
211 |
aagtgtctaattctaaagtttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggttgcttcacatgaac |
300 |
Q |
| |
|
|||| ||||||| |||||||||||||||||| |||||||||||||| ||| |||||||||| || ||||||||||||||||||| |
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| T |
31716297 |
aagt------atctaaaggttattctggtgatgcattcgaggctaggcttattttttagatttctaaaactttggttgcttcacatgaac |
31716214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 230 - 313
Target Start/End: Original strand, 31730169 - 31730252
Alignment:
| Q |
230 |
ttattctggtgatgcatttgaggctaggcttatatttgagatttctaagaccttggttgcttcacatgaactatattccatgta |
313 |
Q |
| |
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||||||| ||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| | |||||||||| |
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| T |
31730169 |
ttattctcgtgatgcttttgaggctagacttatatttgagatttctaaggccttggttgcttctcatgaattgaattccatgta |
31730252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 31725929 - 31726041
Alignment:
| Q |
21 |
agaagtccacgtaaggattggaagataagaacaagcccaaagctaagatggatgataagatcaccattgaaattgttgacaaaagtcaagaatacgtata |
120 |
Q |
| |
|
||||| ||||||||| ||||| ||| | ||||| ||||| ||| |||||| |||| | ||||||||||||| |||||||||| | ||||| |||| |
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| T |
31725929 |
agaagcccacgtaagttttggaggatcaaaacaatcccaaggcttagatgggtgattaaatcaccattgaaaatgttgacaaattttaagaagggttata |
31726028 |
T |
|
| Q |
121 |
tgaactttatgtt |
133 |
Q |
| |
|
||||||||||||| |
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|
| T |
31726029 |
tgaactttatgtt |
31726041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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