View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9995_low_13 (Length: 314)

Name: NF9995_low_13
Description: NF9995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9995_low_13
NF9995_low_13
[»] chr1 (2 HSPs)
chr1 (17-287)||(51760794-51761064)
chr1 (121-213)||(29277921-29278013)
[»] chr6 (1 HSPs)
chr6 (121-307)||(17718466-17718652)
[»] chr3 (2 HSPs)
chr3 (121-307)||(2550903-2551089)
chr3 (121-307)||(13846729-13846915)
[»] chr8 (1 HSPs)
chr8 (121-307)||(45355289-45355475)
[»] chr5 (3 HSPs)
chr5 (121-307)||(23760984-23761170)
chr5 (121-307)||(23826445-23826631)
chr5 (121-307)||(17038773-17038959)
[»] chr4 (2 HSPs)
chr4 (121-307)||(43601004-43601190)
chr4 (121-213)||(1153094-1153186)
[»] chr7 (1 HSPs)
chr7 (130-307)||(9241236-9241413)
[»] chr2 (1 HSPs)
chr2 (121-307)||(15514710-15514894)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 51761064 - 51760794
Alignment:
Q  17 agaattagctctacctggaacattgaagcactttatatcagtaaaatcatcaacacttgatgaaatcagatgtcctcagcctattgctaaataatataat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51761064 agaattagctctacctggaacattgaagcactttatatcagtaaaatcatcaacacttgatgaaatcagatgtcctcagcctattgctaaataatataat 51760965  T
Q  117 cagatgtcttttaaaattgattatattatttaatcaggataaacaacattatttgaataaagtagctaagcacaaggcaaaacatgagaaacttaagnnn 216  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       
T  51760964 cagatgtcttttaaaattgattatgttatttaatcaggataaacaacattatttgaataaagtagctaagcgcaaggcaaaacatgagaaacttaagaaa 51760865  T
Q  217 nnnnggtactatctttatcccaaatttaattgattgtgttattgaactcaatttctaataatatttcttat 287  Q
        |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51760864 aaaaggtactatgtttatcctaaatttaattgattgtgttattgaactcaatttctaataatatttcttat 51760794  T

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Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 121 - 213
Target Start/End: Original strand, 29277921 - 29278013
Alignment:
Q  121 tgtcttttaaaattgattatattatttaatcaggataaacaacattatttgaataaagtagctaagcacaaggcaaaacatgagaaacttaag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||    
T  29277921 tgtcttttaaaattgattatattatttaatcaggataaacaacattatttggataaagcagctaagcgcaaggcaaaacatgagaaacttaag 29278013  T

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Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 121 - 307
Target Start/End: Original strand, 17718466 - 17718652
Alignment:
Q  121 tgtcttttaaaattgattatattatttaatcaggataaacaacattatttgaataaagtagctaagcacaaggcaaaacatgagaaacttaagnnnnnnn 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||| ||           
T  17718466 tgtcttttaaaattgattatattatttaatcaggataaacaacattatttggataaagcagctaagcgcaaggcaaaacatgagaaacttgag-aaaaaa 17718564  T
Q  221 ggtactatctttatcccaaatttaattgat--tgtgttattgaactcaatttctaataatatttcttattgtatgaattatctctgctt 307  Q
    |||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  17718565 ggtactatgtttatcccaaatttaattgattctgtgttattgaactcaatttctaataata-ttcttattgtatgaattatctttgctt 17718652  T

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Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 121 - 307
Target Start/End: Complemental strand, 2551089 - 2550903
Alignment:
Q  121 tgtcttttaaaattgattatattatttaatcaggataaacaacattatttgaataaagtagctaagcacaaggcaaaacatgagaaacttaagnnnnnnn 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||           
T  2551089 tgtcttttaaaattgattatattatttaatcaggataaacaacattatttggataaagcagctaagcgcaaggcaaaacatgagaaacttaag-aaaaaa 2550991  T
Q  221 ggtactatctttatcccaaatttaattga--ttgtgttattgaactcaatttctaataatatttcttattgtatgaattatctctgctt 307  Q
    |||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||    
T  2550990 ggtactatgtttatcccaaatttaattgattttgtgttattgaactcaatttctaataata-ttcttattttatgaattatctttgctt 2550903  T

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Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 121 - 307
Target Start/End: Complemental strand, 13846915 - 13846729
Alignment:
Q  121 tgtcttttaaaattgattatattatttaatcaggataaacaacattatttgaataaagtagctaagcacaaggcaaaacatgagaaacttaagnnnnnnn 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||           
T  13846915 tgtcttttaaaattgattatattatttaatcaggataaacaacattatttggataaagcagctaagcgcaaggcaaaacatgagaaacttaag-aaaaaa 13846817  T
Q  221 ggtactatctttatcccaaatttaattga--ttgtgttattgaactcaatttctaataatatttcttattgtatgaattatctctgctt 307  Q
    |||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||    
T  13846816 ggtactatgtttatcccaaatttaattgattttgtgttattgaactcaatttctaataata-ttcttattttatgaattatctttgctt 13846729  T

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Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 121 - 307
Target Start/End: Original strand, 45355289 - 45355475
Alignment:
Q  121 tgtcttttaaaattgattatattatttaatcaggataaacaacattatttgaataaagtagctaagcacaaggcaaaacatgagaaacttaagnnnnnnn 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||           
T  45355289 tgtcttttaaaattgattatattatttaatcaggataaacaacattatttggataaagcagctaagcgcaaggcaaaacatgagaaacttaag-aaaaaa 45355387  T
Q  221 ggtactatctttatcccaaatttaattga--ttgtgttattgaactcaatttctaataatatttcttattgtatgaattatctctgctt 307  Q
    |||||||| ||||||||||||||||||||  || ||||||||||||||||||||||||||| |||||||| |||||||||||| |||||    
T  45355388 ggtactatgtttatcccaaatttaattgattttatgttattgaactcaatttctaataata-ttcttattttatgaattatctttgctt 45355475  T

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Target: chr5 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 121 - 307
Target Start/End: Original strand, 23760984 - 23761170
Alignment:
Q  121 tgtcttttaaaattgattatattatttaatcaggataaacaacattatttgaataaagtagctaagcacaaggcaaaacatgagaaacttaagnnnnnnn 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||           
T  23760984 tgtcttttaaaattgattatattatttaatcaggataaacaacattatttggataaagcagctaagcgcaaggcaaaacatgagaaacttaag-aaaaaa 23761082  T
Q  221 ggtactatctttatcccaaatttaattga--ttgtgttattgaactcaatttctaataatatttcttattgtatgaattatctctgctt 307  Q
    |||||||| ||||| ||||||||||||||  ||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  23761083 ggtactatgtttattccaaatttaattgattttgtgttattgaactgaatttctaataata-ttcttattgtatgaattatctttgctt 23761170  T

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Target: chr5; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 121 - 307
Target Start/End: Original strand, 23826445 - 23826631
Alignment:
Q  121 tgtcttttaaaattgattatattatttaatcaggataaacaacattatttgaataaagtagctaagcacaaggcaaaacatgagaaacttaagnnnnnnn 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||           
T  23826445 tgtcttttaaaattgattatattatttaatcaggataaacaacattatttggataaagcagctaagcgcaaggcaaaacatgagaaacttaag-aaaaaa 23826543  T
Q  221 ggtactatctttatcccaaatttaattga--ttgtgttattgaactcaatttctaataatatttcttattgtatgaattatctctgctt 307  Q
    |||||||| ||||| ||||||||||||||  ||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  23826544 ggtactatgtttattccaaatttaattgattttgtgttattgaactgaatttctaataata-ttcttattgtatgaattatctttgctt 23826631  T

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Target: chr5; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 121 - 307
Target Start/End: Complemental strand, 17038959 - 17038773
Alignment:
Q  121 tgtcttttaaaattgattatattatttaatcaggataaacaacattatttgaataaagtagctaagcacaaggcaaaacatgagaaacttaagnnnnnnn 220  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||           
T  17038959 tgtcttttaaaattgattatattatttaatccggataaacaacattatttggataaagcagctaagcgcaaggcaaaacatgagaaacttaag-aaaaaa 17038861  T
Q  221 ggtactatctttatcccaaatttaattga--ttgtgttattgaactcaatttctaataatatttcttattgtatgaattatctctgctt 307  Q
    |||||||  |||||||| |||||||||||  |||||||||| ||||||||||||||||||| |||||||||||| |||||||| |||||    
T  17038860 ggtactaagtttatccctaatttaattgattttgtgttattcaactcaatttctaataata-ttcttattgtataaattatctttgctt 17038773  T

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Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 121 - 307
Target Start/End: Complemental strand, 43601190 - 43601004
Alignment:
Q  121 tgtcttttaaaattgattatattatttaatcaggataaacaacattatttgaataaagtagctaagcacaaggcaaaacatgagaaacttaagnnnnnnn 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||           
T  43601190 tgtcttttaaaattgattatattatttaatcaggataaacaacattatttggataaagcagctaagcgcaaggcaaaacatgagaaacttaag-aaaaaa 43601092  T
Q  221 ggtactatctttatcccaaatttaattga--ttgtgttattgaactcaatttctaataatatttcttattgtatgaattatctctgctt 307  Q
    |||||||| ||||||| ||||||||||||  || ||||||||||||||||||||||||||| |||||||| |||||||||||| |||||    
T  43601091 ggtactatgtttatcctaaatttaattgattttttgttattgaactcaatttctaataata-ttcttattttatgaattatctttgctt 43601004  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 121 - 213
Target Start/End: Complemental strand, 1153186 - 1153094
Alignment:
Q  121 tgtcttttaaaattgattatattatttaatcaggataaacaacattatttgaataaagtagctaagcacaaggcaaaacatgagaaacttaag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||    
T  1153186 tgtcttttaaaattgattatattatttaatcaggataaacaacattatttggataaagcagctaagcgcaaggcaaaacatgagaaacttaag 1153094  T

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Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 130 - 307
Target Start/End: Original strand, 9241236 - 9241413
Alignment:
Q  130 aaattgattatattatttaatcaggataaacaacattatttgaataaagtagctaagcacaaggcaaaacatgagaaacttaagnnnnnnnggtactatc 229  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||       ||||||||     
T  9241236 aaattgattatattatttaatcagtataaacaacattatttggataaagcagctaagcgcaaggcaaaacatgagaaacttaag-ataaaaggtactatg 9241334  T
Q  230 tttatcccaaatttaattga--ttgtgttattgaactcaatttctaataatatttcttattgtatgaattatctctgctt 307  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||    
T  9241335 tttatcccaaatttaattgattttgtgttattgaactcaatttctaataata-ttcttattttatgaattatctttgctt 9241413  T

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Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 121 - 307
Target Start/End: Complemental strand, 15514894 - 15514710
Alignment:
Q  121 tgtcttttaaaattgattatattatttaatcaggataaacaacattatttgaataaagtagctaagcacaaggcaaaacatgagaaacttaagnnnnnnn 220  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||| || ||| |||||||| |||||||||| ||||||||||||||           
T  15514894 tgtcttttaaaattaattatattatttaatcaggagaaacaacattatttggat-aagcagctaagcgcaaggcaaaatatgagaaacttaagaaaaaat 15514796  T
Q  221 ggtactatctttatcccaaatttaattga--ttgtgttattgaactcaatttctaataatatttcttattgtatgaattatctctgctt 307  Q
     ||| ||  ||||||||||||||||||||  ||||||||||||| |||||||||||||||| ||||| ||||||||||||||| |||||    
T  15514795 -gtattaagtttatcccaaatttaattgattttgtgttattgaattcaatttctaataata-ttctt-ttgtatgaattatctttgctt 15514710  T

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