View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9995_low_14 (Length: 307)

Name: NF9995_low_14
Description: NF9995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9995_low_14
NF9995_low_14
[»] chr3 (19 HSPs)
chr3 (20-301)||(28044182-28044463)
chr3 (46-173)||(28516164-28516291)
chr3 (178-294)||(28474983-28475100)
chr3 (174-294)||(28516001-28516124)
chr3 (175-294)||(28127217-28127337)
chr3 (175-294)||(28141148-28141268)
chr3 (53-173)||(11405969-11406087)
chr3 (110-173)||(28175462-28175525)
chr3 (213-294)||(27960463-27960543)
chr3 (112-173)||(28099657-28099718)
chr3 (59-108)||(28475113-28475162)
chr3 (132-173)||(28500606-28500647)
chr3 (112-168)||(28045082-28045138)
chr3 (108-146)||(27995812-27995850)
chr3 (252-294)||(27995975-27996017)
chr3 (237-294)||(28099777-28099834)
chr3 (104-156)||(27957123-27957175)
chr3 (110-150)||(28076856-28076896)
chr3 (110-150)||(28156373-28156413)
[»] scaffold0067 (1 HSPs)
scaffold0067 (53-173)||(21140-21258)
[»] chr4 (2 HSPs)
chr4 (102-154)||(9386664-9386716)
chr4 (104-154)||(9332881-9332931)
[»] chr7 (1 HSPs)
chr7 (212-289)||(8697208-8697283)


Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 301
Target Start/End: Original strand, 28044182 - 28044463
Alignment:
Q  20 taaataacagagttcgatatccaccataaataatgatacatacattaacagtttaaagggtggctaatgcatagattgaatctataaatattattgccac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28044182 taaataacagagttcgatatccaccataaataatgatacatacattaacagtttaaagggtggctaatgcatagattgaatctataaatgttattgccac 28044281  T
Q  120 tgcagcttttgtttgctgcagaacatgaattgcagtgaatattactcctgattcgattgttagaaagtatgtgctgacaacagtaaaacattgaggtaga 219  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28044282 tgcagcttttgttttctgcagaacatgaattgcagtgaatattactcctgattcaattgttagaaagtatgtgctgacaacagtaaaacattgaggtaga 28044381  T
Q  220 aaacaatctcatgcttgtttttcttttgttactttcttagattttctatttgtatatgatttccattttcggtctgtgctcc 301  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28044382 aaacaatctcatgcttgtttttcttttgttactttctcagattttctatttgtatatgatttccattttcggtctgtgctcc 28044463  T

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Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 46 - 173
Target Start/End: Complemental strand, 28516291 - 28516164
Alignment:
Q  46 taaataatgatacatacattaacagtttaaagggtggctaatgcatagattgaatctataaatattattgccactgcagcttttgtttgctgcagaacat 145  Q
    |||| ||||||| ||| |||||||||||||| |||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||    
T  28516291 taaaaaatgatatataaattaacagtttaaaaggtggcaaatgcatagattgaatctttaaatgttaatgccactgcagcttttgtttgctgcagaacat 28516192  T
Q  146 gaattgcagtgaatattactcctgattc 173  Q
    ||||||||||||||||||||||||||||    
T  28516191 gaattgcagtgaatattactcctgattc 28516164  T

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Target: chr3; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 178 - 294
Target Start/End: Complemental strand, 28475100 - 28474983
Alignment:
Q  178 gttagaaagtatgtgctgacaacagtaaaac-attgaggtagaaaacaatctcatgcttgtttttcttttgttactttcttagattttctatttgtatat 276  Q
    |||| |||||||||||| ||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| ||||||    
T  28475100 gttaaaaagtatgtgcttacaacagtacaaccattgaggtagaaaacaatctcatggttgtttttcttttgttactttctcagattttttattggtatat 28475001  T
Q  277 gatttccattttcggtct 294  Q
    |||||||| ||| |||||    
T  28475000 gatttccaattttggtct 28474983  T

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Target: chr3; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 174 - 294
Target Start/End: Complemental strand, 28516124 - 28516001
Alignment:
Q  174 gattgttagaaagtatgtgctgacaacagtaaaac-attgaggtagaaaacaatctcatgcttgtttttcttttgtt--actttcttagattttctattt 270  Q
    |||||||| ||||||||||||||||||||||| || ||| |||||||||||||||||||| ||||||||||||| ||  |||||||  |||||||||||     
T  28516124 gattgttaaaaagtatgtgctgacaacagtaacaccatttaggtagaaaacaatctcatggttgtttttctttttttttactttctccgattttctattg 28516025  T
Q  271 gtatatgatttccattttcggtct 294  Q
    |||||||||||||| |||||||||    
T  28516024 gtatatgatttccaatttcggtct 28516001  T

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Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 175 - 294
Target Start/End: Original strand, 28127217 - 28127337
Alignment:
Q  175 attgttagaaagtatgtgctgacaacagtaaaaca-ttgaggtagaaaacaatctcatgcttgtttttcttttgttactttcttagattttctatttgta 273  Q
    ||||||| |||||| || || |||||||||| ||| ||||||||||||| ||||||||| ||||||||||||| | |||| || ||||||||||||||||    
T  28127217 attgttaaaaagtacgtccttacaacagtaacacaattgaggtagaaaataatctcatggttgtttttcttttatcacttcctcagattttctatttgta 28127316  T
Q  274 tatgatttccattttcggtct 294  Q
    ||||||||||| ||| |||||    
T  28127317 tatgatttccaattttggtct 28127337  T

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Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 175 - 294
Target Start/End: Original strand, 28141148 - 28141268
Alignment:
Q  175 attgttagaaagtatgtgctgacaacagtaaaaca-ttgaggtagaaaacaatctcatgcttgtttttcttttgttactttcttagattttctatttgta 273  Q
    ||||||| |||||| || || |||||||||| ||| ||||||||||||| ||||||||| ||||||||||||| | |||| || ||||||||||||||||    
T  28141148 attgttaaaaagtacgtccttacaacagtaacacaattgaggtagaaaataatctcatggttgtttttcttttatcacttcctcagattttctatttgta 28141247  T
Q  274 tatgatttccattttcggtct 294  Q
    ||||||||||| ||| |||||    
T  28141248 tatgatttccaattttggtct 28141268  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 173
Target Start/End: Original strand, 11405969 - 11406087
Alignment:
Q  53 tgatacatacattaacagtttaaagggtggctaatgcatagattgaatctataaatattattgccactgcagcttttgtttgctgcagaacatgaattgc 152  Q
    ||||| ||||||||||||||||  ||||||| |||||||| ||||||||||||||| |||||||| |||||| ||||| ||||||  | ||||||| |||    
T  11405969 tgatatatacattaacagttta--gggtggcaaatgcataaattgaatctataaatgttattgcctctgcagtttttgcttgctgtggtacatgaactgc 11406066  T
Q  153 agtgaatattactcctgattc 173  Q
    |||  |||| |||||| ||||    
T  11406067 agtagatataactcctaattc 11406087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 28175462 - 28175525
Alignment:
Q  110 ttattgccactgcagcttttgtttgctgcagaacatgaattgcagtgaatattactcctgattc 173  Q
    |||||| | ||||||||||||||||||||||||||||||||||| | | |||||||||| ||||    
T  28175462 ttattgactctgcagcttttgtttgctgcagaacatgaattgcaataactattactcctaattc 28175525  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 27960463 - 27960543
Alignment:
Q  213 aggtagaaaacaatctcatgcttgtttttcttttgttactttcttagattttctatttgtatatgatttccattttcggtct 294  Q
    |||||||| ||||||||||| |  ||| |||| |||||  |||| |||||||||||| ||||||||||||||||||||||||    
T  27960463 aggtagaatacaatctcatggta-tttctcttctgttatattctcagattttctattggtatatgatttccattttcggtct 27960543  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 28099657 - 28099718
Alignment:
Q  112 attgccactgcagcttttgtttgctgcagaacatgaattgcagtgaatattactcctgattc 173  Q
    |||||| |||||||||||||||| | |||||||||||||| ||| |||||||||||| ||||    
T  28099657 attgcccctgcagcttttgtttgttccagaacatgaattgaagtaaatattactcctaattc 28099718  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 28475162 - 28475113
Alignment:
Q  59 atacattaacagtttaaagggtggctaatgcatagattgaatctataaat 108  Q
    ||||| ||| |||||||||||||| |||||||||||||||||||||||||    
T  28475162 atacactaatagtttaaagggtggataatgcatagattgaatctataaat 28475113  T

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Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 28500647 - 28500606
Alignment:
Q  132 ttgctgcagaacatgaattgcagtgaatattactcctgattc 173  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  28500647 ttgctgcagaacatgaattgcagtgaatattactcctaattc 28500606  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 28045082 - 28045138
Alignment:
Q  112 attgccactgcagcttttgtttgctgcagaacatgaattgcagtgaatattactcct 168  Q
    |||||| || || |||||||| ||||| |||||||||||| ||||||||||||||||    
T  28045082 attgcctctccatcttttgttagctgcggaacatgaattgtagtgaatattactcct 28045138  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 27995812 - 27995850
Alignment:
Q  108 tattattgccactgcagcttttgtttgctgcagaacatg 146  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  27995812 tattattgcccctgcagcttttatttgctgcagaacatg 27995850  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 294
Target Start/End: Original strand, 27995975 - 27996017
Alignment:
Q  252 tttcttagattttctatttgtatatgatttccattttcggtct 294  Q
    ||||| |||||||||||  ||||||||||||||||||||||||    
T  27995975 tttctcagattttctatcggtatatgatttccattttcggtct 27996017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 28099777 - 28099834
Alignment:
Q  237 tttttcttttgttactttcttagattttctatttgtatatgatttccattttcggtct 294  Q
    |||||||| | ||| ||||| |||||||||||  || |||||||||||||||||||||    
T  28099777 tttttcttcttttattttctcagattttctatcggtgtatgatttccattttcggtct 28099834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 27957123 - 27957175
Alignment:
Q  104 taaatattattgccactgcagcttttgtttgctgcagaacatgaattgcagtg 156  Q
    ||||| |||||||| |||||  |||||||| |||||||| |||||||||||||    
T  27957123 taaatgttattgcctctgcaaattttgtttactgcagaatatgaattgcagtg 27957175  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 28076856 - 28076896
Alignment:
Q  110 ttattgccactgcagcttttgtttgctgcagaacatgaatt 150  Q
    |||||| | |||||||||||||||||||| |||||||||||    
T  28076856 ttattgactctgcagcttttgtttgctgcggaacatgaatt 28076896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 28156373 - 28156413
Alignment:
Q  110 ttattgccactgcagcttttgtttgctgcagaacatgaatt 150  Q
    |||||| | |||||||||||||||||||| |||||||||||    
T  28156373 ttattgactctgcagcttttgtttgctgcggaacatgaatt 28156413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 173
Target Start/End: Original strand, 21140 - 21258
Alignment:
Q  53 tgatacatacattaacagtttaaagggtggctaatgcatagattgaatctataaatattattgccactgcagcttttgtttgctgcagaacatgaattgc 152  Q
    ||||| ||||||||||||||||  ||||||| |||||||| ||||||||||||||| |||||||| |||||| ||||| ||||||  | ||||||| |||    
T  21140 tgatatatacattaacagttta--gggtggcaaatgcataaattgaatctataaatgttattgcctctgcagtttttgcttgctgtggtacatgaactgc 21237  T
Q  153 agtgaatattactcctgattc 173  Q
    |||  |||| |||||| ||||    
T  21238 agtagatataactcctaattc 21258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 9386716 - 9386664
Alignment:
Q  102 tataaatattattgccactgcagcttttgtttgctgcagaacatgaattgcag 154  Q
    ||||||| |||||||| |||||||||||||| ||||||| |||| ||||||||    
T  9386716 tataaatgttattgcctctgcagcttttgttcgctgcaggacataaattgcag 9386664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 9332931 - 9332881
Alignment:
Q  104 taaatattattgccactgcagcttttgtttgctgcagaacatgaattgcag 154  Q
    ||||| |||||||| |||||||||||||| ||||||| |||| ||||||||    
T  9332931 taaatgttattgcctctgcagcttttgttcgctgcaggacattaattgcag 9332881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 289
Target Start/End: Complemental strand, 8697283 - 8697208
Alignment:
Q  212 gaggtagaaaacaatctcatgcttgtttttcttttgttac--tttcttagattttctatttgtatatgatttccattttc 289  Q
    |||||||| ||||||||||||    ||||| |||||||||  |||||| |||||| |||| |||||||||||||||||||    
T  8697283 gaggtagagaacaatctcatg----ttttttttttgttacaatttctttgattttatattggtatatgatttccattttc 8697208  T

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