View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9995_low_17 (Length: 272)
Name: NF9995_low_17
Description: NF9995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9995_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 6 - 263
Target Start/End: Original strand, 6868362 - 6868619
Alignment:
| Q |
6 |
atcataactaacgtcggaacggatttgaacggtggttttggataagggtgatttgtgtttgggggtatttgagattgggaggaagtggttttgatggaga |
105 |
Q |
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| T |
6868362 |
atcataactaacgtcggaacggatttgaacggtggttttggataagggtgatttgtgtttgggggtatttgagattgggaggaagtgggtttgatggaga |
6868461 |
T |
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| Q |
106 |
agtggttttttagagaagctggtttgagtaggttgtgagtgtaaggaagaaacgttgccgttgagaagagaagccatagagataatttgtttggtggagt |
205 |
Q |
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| T |
6868462 |
agtggttttttagagaagctggtttgagtaggttgtgagtgtaaggaagaaacgttgccgttgagaagagaagccatagaggaaattggtttggtggagt |
6868561 |
T |
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| Q |
206 |
atgcaaagtgattatgtggtgtgtttaataatggttgtgtataagttcagcccttctt |
263 |
Q |
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| T |
6868562 |
atgcaaagtgattatgtggtgtgtttaataatggttgtgtataagttcagcccttctt |
6868619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 10 - 182
Target Start/End: Complemental strand, 14080394 - 14080228
Alignment:
| Q |
10 |
taactaacgtcggaacggatttgaacggtggttttggataagggtgatttgtgtttgggggtatttgagattgggaggaagtggttttgatggagaagtg |
109 |
Q |
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| T |
14080394 |
taactaacgtctgaacggattttaacggt---tttggataacggtgatttttgtttgggggtttttgagattggga---agtgggtttgatggagaagtg |
14080301 |
T |
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| Q |
110 |
gttttttagagaagctggtttgagtaggttgtgagtgtaaggaagaaacgttgccgttgagaagagaagccat |
182 |
Q |
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| T |
14080300 |
ctttttttgagaagctggtttgagtgggttgtgggtgtaaggaagaaacgctgccgttgagaagagaagccat |
14080228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 10 - 182
Target Start/End: Complemental strand, 14390422 - 14390256
Alignment:
| Q |
10 |
taactaacgtcggaacggatttgaacggtggttttggataagggtgatttgtgtttgggggtatttgagattgggaggaagtggttttgatggagaagtg |
109 |
Q |
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| T |
14390422 |
taactaacgtctgaacggattttaacggt---tttggataacggtgatttttgtttgggggtttttgagattggga---agtgggtttgatggagaagtg |
14390329 |
T |
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| Q |
110 |
gttttttagagaagctggtttgagtaggttgtgagtgtaaggaagaaacgttgccgttgagaagagaagccat |
182 |
Q |
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| T |
14390328 |
ctttttttgagaagctggtttgagtgggttgtgggtgtaaggaagaaacgctgccgttgagaagagaagccat |
14390256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 260
Target Start/End: Complemental strand, 14080121 - 14080083
Alignment:
| Q |
222 |
tggtgtgtttaataatggttgtgtataagttcagccctt |
260 |
Q |
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| T |
14080121 |
tggtgtgtttaataatggttgtgtataagttcaaccctt |
14080083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 260
Target Start/End: Complemental strand, 14390149 - 14390111
Alignment:
| Q |
222 |
tggtgtgtttaataatggttgtgtataagttcagccctt |
260 |
Q |
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| T |
14390149 |
tggtgtgtttaataatggttgtgtataagttcaaccctt |
14390111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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