View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9995_low_18 (Length: 240)

Name: NF9995_low_18
Description: NF9995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9995_low_18
NF9995_low_18
[»] chr5 (9 HSPs)
chr5 (18-240)||(10599794-10600016)
chr5 (22-229)||(10603463-10603669)
chr5 (133-230)||(10589718-10589815)
chr5 (62-114)||(19607272-19607324)
chr5 (133-230)||(10579828-10579926)
chr5 (66-113)||(7191759-7191806)
chr5 (23-88)||(10549504-10549569)
chr5 (65-114)||(10610463-10610512)
chr5 (65-114)||(10748422-10748471)


Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 10599794 - 10600016
Alignment:
Q  18 gaagtcattgacaaactgtagtaagttgcaatcgctatctttaacctataataattttggaggtagtttgcaaaattctattggaaatttatccaccaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10599794 gaagtcattgacaaactgtagtaagttgcaatcgctatctttaacctataataattttggaggtagtttgcaaaattctattggaaatttatccaccaca 10599893  T
Q  118 cttgatgagttaaagattggggttaatcaaatatatggacaaattcccatagatttaggaaatctaattagcttgagactattgaacatggaagataacc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  10599894 cttgatgagttaaagattggggttaatcaaatatatggacaaattcccatagatttaggaaatctaattagcttgagactattgaacatgggacataacc 10599993  T
Q  218 atttggaaggaacagttccaact 240  Q
    ||| |||||||||  ||||||||    
T  10599994 attaggaaggaacgattccaact 10600016  T

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Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 22 - 229
Target Start/End: Original strand, 10603463 - 10603669
Alignment:
Q  22 tcattgacaaactgtagtaagttgcaatcgctatctttaacctataataattttggaggtagtttgcaaaattctattggaaatttatccaccacacttg 121  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||     
T  10603463 tcattgacaaactgtagtaagttgcaatcactatctttaaccaataataattttggaggtagtttgcaaaattctataggaaatttatcgaccacactta 10603562  T
Q  122 atgagttaaagattggggttaatcaaatatatggacaaattcccatagatttaggaaatctaattagcttgagactattgaacatggaagataaccattt 221  Q
     | | ||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||| |||||    
T  10603563 gtcaattaaagattggggttaatcaaatttctggacaaattcccatagagttaggaaatctaattagcttgagacaattg-acatggaagataatcattt 10603661  T
Q  222 ggaaggaa 229  Q
    ||||||||    
T  10603662 ggaaggaa 10603669  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 230
Target Start/End: Complemental strand, 10589815 - 10589718
Alignment:
Q  133 attggggttaatcaaatatatggacaaattcccatagatttaggaaatctaattagcttgagactattgaacatggaagataaccatttggaaggaac 230  Q
    ||||||| |||||||||||||||  ||||||| ||||| ||||||||||||| ||||||||  || || | |||||||||||| | ||| ||||||||    
T  10589815 attgggggtaatcaaatatatggtaaaattcctatagaattaggaaatctaactagcttgattctcttaaccatggaagataatcgtttagaaggaac 10589718  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 19607324 - 19607272
Alignment:
Q  62 cctataataattttggaggtagtttgcaaaattctattggaaatttatccacc 114  Q
    ||||||||||||||||||||||||||| |||||| ||||| ||||||||||||    
T  19607324 cctataataattttggaggtagtttgccaaattccattggtaatttatccacc 19607272  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 230
Target Start/End: Original strand, 10579828 - 10579926
Alignment:
Q  133 attggggttaatcaaatatatggacaaattcccatagatttaggaaatctaattag-cttgagactattgaacatggaagataaccatttggaaggaac 230  Q
    ||||||| |||||||||||||||  ||||||| ||||| ||||||||||||| ||| |||||  || || | |||||||||||||| ||| ||||||||    
T  10579828 attgggggtaatcaaatatatggtaaaattcctatagaattaggaaatctaactagccttgattctcttaaccatggaagataaccgtttagaaggaac 10579926  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 7191759 - 7191806
Alignment:
Q  66 taataattttggaggtagtttgcaaaattctattggaaatttatccac 113  Q
    ||||||||||||||||| ||||| |||||| ||||| |||||||||||    
T  7191759 taataattttggaggtaatttgccaaattccattgggaatttatccac 7191806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 10549504 - 10549569
Alignment:
Q  23 cattgacaaactgtagtaagttgcaatcgctatctttaacctataataattttggaggtagtttgc 88  Q
    |||||||||| |||||||| |||||| |  | ||| || || ||||||||||||||||||||||||    
T  10549504 cattgacaaattgtagtaatttgcaagcattttctatatcccataataattttggaggtagtttgc 10549569  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 10610463 - 10610512
Alignment:
Q  65 ataataattttggaggtagtttgcaaaattctattggaaatttatccacc 114  Q
    ||||||| |||||||||||||||| |||||  ||||| ||||||||||||    
T  10610463 ataataagtttggaggtagtttgccaaatttcattggcaatttatccacc 10610512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 10748471 - 10748422
Alignment:
Q  65 ataataattttggaggtagtttgcaaaattctattggaaatttatccacc 114  Q
    ||||||| |||||||||||||||| |||||| ||||| | ||||||||||    
T  10748471 ataataagtttggaggtagtttgccaaattccattggcagtttatccacc 10748422  T

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