View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9995_low_20 (Length: 238)
Name: NF9995_low_20
Description: NF9995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9995_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 26496315 - 26496208
Alignment:
| Q |
1 |
tgaaaacctagaataagaccaaatgtaatcctttcatcccctatcagctttgaataaattgcttcctgattcagacagctcctgcaaacatcctttaatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26496315 |
tgaaaacctagaataagaccaaatgtaatcctttcatcccctatcagctttgaataaattgcttcctgattcagacagctcctgcaaacatcctttaatt |
26496216 |
T |
|
| Q |
101 |
ttactatc |
108 |
Q |
| |
|
|||||||| |
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| T |
26496215 |
ttactatc |
26496208 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 136 - 224
Target Start/End: Complemental strand, 26496180 - 26496092
Alignment:
| Q |
136 |
gagtcacattggtaggtttcaactaaagaaattctaaaaacagtgatatacaacctgttaaaacaaaagagattctacagcaacaaatg |
224 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26496180 |
gagtcacattggtaggtttcaactaaacaaattctaaaaacagtgatatacaacctgttaaaacaaaagagattctacagcaacaaatg |
26496092 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 16960829 - 16960872
Alignment:
| Q |
171 |
aaaaacagtgatatacaacctgttaaaacaaaagagattctaca |
214 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
16960829 |
aaaaacagtgatataaaacctgttaaaacaaaagagattctaca |
16960872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 4435998 - 4435933
Alignment:
| Q |
43 |
atcagctttgaataaattgcttcctgattcagacagctcctgcaaacatcctttaattttactatc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4435998 |
atcagctttgaataaattgcttcctgattcagacagctcctgcaaacatcctttaattttactatc |
4435933 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 4092220 - 4092155
Alignment:
| Q |
43 |
atcagctttgaataaattgcttcctgattcagacagctcctgcaaacatcctttaattttactatc |
108 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
4092220 |
atcagccttgaataaattgcttcctgatttagacagctactgcaaacatcctttaattttactatc |
4092155 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 4092115 - 4092060
Alignment:
| Q |
159 |
taaagaaattctaaaaacagtgatatacaacctgttaaaacaaaagagattctaca |
214 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4092115 |
taaacaaattctaaaaacagtgatatacaacctgttaaaacaaaagagattctaca |
4092060 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 4435893 - 4435838
Alignment:
| Q |
159 |
taaagaaattctaaaaacagtgatatacaacctgttaaaacaaaagagattctaca |
214 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4435893 |
taaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctaca |
4435838 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 37719160 - 37719225
Alignment:
| Q |
43 |
atcagctttgaataaattgcttcctgattcagacagctcctgcaaacatcctttaattttactatc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37719160 |
atcagctttgaataaattgcttcctgattcagacagctcctgcaaacatcctttaattttactatc |
37719225 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 37719265 - 37719320
Alignment:
| Q |
159 |
taaagaaattctaaaaacagtgatatacaacctgttaaaacaaaagagattctaca |
214 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37719265 |
taaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctaca |
37719320 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 46594840 - 46594905
Alignment:
| Q |
43 |
atcagctttgaataaattgcttcctgattcagacagctcctgcaaacatcctttaattttactatc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46594840 |
atcagctttgaataaattgcttcctgattcagacagctcctgcaaacatcctttaattttactatc |
46594905 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 46594945 - 46595000
Alignment:
| Q |
159 |
taaagaaattctaaaaacagtgatatacaacctgttaaaacaaaagagattctaca |
214 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46594945 |
taaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctaca |
46595000 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 32550224 - 32550262
Alignment:
| Q |
46 |
agctttgaataaattgcttcctgattcagacagctcctg |
84 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||| |
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| T |
32550224 |
agctttgaataaattacgtcctgattcagacagctcctg |
32550262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 47521482 - 47521417
Alignment:
| Q |
43 |
atcagctttgaataaattgcttcctgattcagacagctcctgcaaacatcctttaattttactatc |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47521482 |
atcaactttgaataaattgcttcctgattcagacagctcctgcaaacatcctttaattttactatc |
47521417 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 47521377 - 47521322
Alignment:
| Q |
159 |
taaagaaattctaaaaacagtgatatacaacctgttaaaacaaaagagattctaca |
214 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47521377 |
taaacaaattctaaaaacaatgatatacaacctgtttaaacaaaagagattctaca |
47521322 |
T |
|
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