View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9995_low_3 (Length: 628)
Name: NF9995_low_3
Description: NF9995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9995_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 312 - 624
Target Start/End: Original strand, 13779705 - 13780017
Alignment:
| Q |
312 |
taaacaatttgttgacagttcaaaaaatggataagttttttctcatctggattactttgtttgtatttattttctttctagttaccattatcaacatcga |
411 |
Q |
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| T |
13779705 |
taaacaatttgttcacagtacaaaaaatggataagttttttctcatctagattactttgtttgtatttattttctttctagttaccattatcaacatcga |
13779804 |
T |
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| Q |
412 |
agaagtgggcgcaagtaacataggaattatcatggtctgcatcttaccactgttaggccttgcatggatcgttactatttgtttcgaaagagacatgtag |
511 |
Q |
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| T |
13779805 |
agaagtgggcgcaagtaatgtaggaattatcatggtctgcatcttaccactgttaggccttgcatggatcgttactatttgtttcaaaagagacatgtag |
13779904 |
T |
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| Q |
512 |
taaggttgtgcccgacctcgtgtaattccagcaactaaataaggtaattaggtcatgtttgggattcaaaacagtttgtttggttcaaagtgggatgctg |
611 |
Q |
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| T |
13779905 |
taaggttgtgtccgacctcgtgtaattccagcaactaaataaggtaattaggtcatgtttgggattcaaaacagttcgtttggttcaaagtgggatgttg |
13780004 |
T |
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| Q |
612 |
atgtccatctcat |
624 |
Q |
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| T |
13780005 |
attttcatctcat |
13780017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 52 - 307
Target Start/End: Original strand, 13777232 - 13777482
Alignment:
| Q |
52 |
atgaaggagtttgaagagaaagaggttgatttggtgattgatgaaaggtttttgttgaatgtgattagaatgtttttgcgacgtaacaacttcaacattg |
151 |
Q |
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| T |
13777232 |
atgaaggagtttgaagagaaagaggttgatttggtgattgatgaaaggtttttgttgaatgtgattagaatgtttttgcgacgtaacaacttcaacattg |
13777331 |
T |
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| Q |
152 |
cgtttgaagaagcagaaaaggacaatagctcttgacaaaactgagtgaaaaagtgttgtagagagacaacttttttgttcacctttcttaccttaacatt |
251 |
Q |
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| T |
13777332 |
cgtttgaagaagcagaaaaggacaatagctcttgacaaaactgagtgaaaaagtg-----gggagacaacatttttgttcacctttcttaccttaacatt |
13777426 |
T |
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| Q |
252 |
ggtttgcaagcttcaacttcaattgtaattttaaatctaattaaatgaggtatgaa |
307 |
Q |
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| T |
13777427 |
ggtttgcaagcttcaacttcaattgtaattttaaatctaattaaatgaggtatgaa |
13777482 |
T |
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