View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9995_low_5 (Length: 430)
Name: NF9995_low_5
Description: NF9995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9995_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 7 - 423
Target Start/End: Original strand, 49590798 - 49591214
Alignment:
| Q |
7 |
catcagacccccaattatactccattcttcccatcgaatatggaacataagttaccatccctcctgcttttatttttgtaccatccggcaacacatcatc |
106 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49590798 |
catcaggcccccaattatactccattcttcccatcgaatatggaacataagttaccatccctcctgcttttatttttgtaccatccggcaacacatcatc |
49590897 |
T |
|
| Q |
107 |
ctctatcacacccttgggatccttcaatcaacaattgatatttgcacaaaaacattattagttattgatatatttaaatgtgtgtgactgaatacaatgt |
206 |
Q |
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| T |
49590898 |
ctctatcacacccttgggatccttcaatcaacaattgatatttgcactaaaacattattagttattgatatatttaaatgtgtgtgactgaatacaatgt |
49590997 |
T |
|
| Q |
207 |
gcaatgtggccacgcacaacctagacccagaaaatgcataccggaggaactgccggatacaatcttagagtctcagttatgactgcatgcaaataatgca |
306 |
Q |
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| T |
49590998 |
gcaatgtggccacgcacaacctagacccaaaaaatgcatacctgaggaactgccggatacaatcttagagtctcagttatgactgcatgcaaataatgca |
49591097 |
T |
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| Q |
307 |
acttctctagtgaatctttattcaataactttgaaaattgtactaccctttgattgaacaattcaaggtcatctttatcatcacattgaggcaatgtaac |
406 |
Q |
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| T |
49591098 |
acttctctagtgaatctttattcaataactttgaaaattgtactaccctttgattgaacaattcaaggtcatctttatcatcacattgaggcaatgtaac |
49591197 |
T |
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| Q |
407 |
attctcttcctatgctt |
423 |
Q |
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| T |
49591198 |
attctcttcctttgctt |
49591214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 7 - 170
Target Start/End: Complemental strand, 7237462 - 7237299
Alignment:
| Q |
7 |
catcagacccccaattatactccattcttcccatcgaatatggaacataagttaccatccctcctgcttttatttttgtaccatccggcaacacatcatc |
106 |
Q |
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|||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
7237462 |
catcaggcccccagttatactccattcttcccattgaatatggaacataagttaccatccctcctgcttttattttggtaccatctggcaacacatcatc |
7237363 |
T |
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| Q |
107 |
ctctatcacacccttgggatccttcaatcaacaattgatatttgcacaaaaacattattagtta |
170 |
Q |
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| T |
7237362 |
ctctatcacacccttgggatccttcaatcaacaattgatatttgcacaaaaacattattagtta |
7237299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 228 - 423
Target Start/End: Complemental strand, 7237004 - 7236809
Alignment:
| Q |
228 |
tagacccagaaaatgcataccggaggaactgccggatacaatcttagagtctcagttatgactgcatgcaaataatgcaacttctctagtgaatctttat |
327 |
Q |
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|||| ||| |||||||||||| ||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7237004 |
tagatccaaaaaatgcatacctgaggaaccgcaggatacaatcttagtgtctcagttatgactgcatgcaaataatgcaacttctctagtgaatctttat |
7236905 |
T |
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| Q |
328 |
tcaataactttgaaaattgtactaccctttgattgaacaattcaaggtcatctttatcatcacattgaggcaatgtaacattctcttcctatgctt |
423 |
Q |
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|||||||||||||||||||||| || ||||||||||| |||| | ||||||||||||||||| | |||||||| |||||||||||||||| ||||| |
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| T |
7236904 |
tcaataactttgaaaattgtacaactctttgattgaataatttagggtcatctttatcatcatactgaggcaaggtaacattctcttcctttgctt |
7236809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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