View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9995_low_8 (Length: 399)
Name: NF9995_low_8
Description: NF9995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9995_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 959260 - 959626
Alignment:
| Q |
1 |
actcccatgttttcttccaagtagaggactatttgagattaatactcaaagtgagattgcatcaaccatatgttcttgttttcatatatagtatgaggtc |
100 |
Q |
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| T |
959260 |
actcccatgttttcttccaagtagaggactatttgagat-aatactcaaagtgagattgcatcaaccatatgttattgttttcata----gtatgaggtc |
959354 |
T |
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| Q |
101 |
nnnnnnncacatcttcctcattgaaagtatnnnnnnn-catcataagcatgggataaatcatttatatggaaaatcaaagtttgcaacttagtcttggcc |
199 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
959355 |
aaaaaaacacatcttcctcattgaaagtataaaaaaaacatcataagcatgggataaataatttatatggaaaatcaaagtttgcaacttagtcttgacc |
959454 |
T |
|
| Q |
200 |
aacttcacattttggttatagttattggtacatttcttccttgcttttgtaccatttgtatgtatcatttgaagcaagtagttctagagataagtgttca |
299 |
Q |
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| T |
959455 |
agcttcacattttggttatagttattggtacatttcttctttgcttttgtaccatttgtatgtatcatttgaagcaagtagttctagagataagtgttca |
959554 |
T |
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| Q |
300 |
aaattttggatcaaattttctattcccaaataggtaagttctagtacattaggaccacaatattagagatat |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
959555 |
aaattttggatcaaattttctattcccaaataggtaagttctagtacattaggaccacaatattagagatat |
959626 |
T |
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