View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9996_high_3 (Length: 237)
Name: NF9996_high_3
Description: NF9996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9996_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 3381555 - 3381342
Alignment:
| Q |
1 |
tttggtgttgcaagtgtatcaacaagttcatatattcttgtccgatgagtttaaagatcttcatgatccaatcctacaaaagggttaacaaataaaattt |
100 |
Q |
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| T |
3381555 |
tttggtgttgcaagtgtatcaacaagttcatatattcttgtccgatgagtttaaagatcttcatgatctaatcctacaaaagggttaacaaataaaattt |
3381456 |
T |
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| Q |
101 |
gtagaactcccatcttcatgagtatgtgtggtattcctaagaggtttcagtatatgacataatcgtttgggattcctgtatcatggtaatatgctttatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3381455 |
gtagaactcccatcttcatgagtatgtgtggtattcctaagaggtttcagtatatgacataatcgtttgggattcctgtatcatggtaatatgctttatg |
3381356 |
T |
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| Q |
201 |
atctttcatggttc |
214 |
Q |
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|||||||||||||| |
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| T |
3381355 |
atctttcatggttc |
3381342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 1488880 - 1488840
Alignment:
| Q |
1 |
tttggtgttgcaagtgtatcaacaagttcatatattcttgt |
41 |
Q |
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||||||||||||| |||| |||||||||||||||||||||| |
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| T |
1488880 |
tttggtgttgcaattgtaccaacaagttcatatattcttgt |
1488840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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