View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9996_low_1 (Length: 386)
Name: NF9996_low_1
Description: NF9996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9996_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 43864891 - 43865258
Alignment:
| Q |
1 |
tttaacaaaaaattaagaaaactgttactggattgttactcaacattttgaggactagttggtgaaattaaagacacccatcgtacgcaaaacttttaaa |
100 |
Q |
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| T |
43864891 |
tttaacaaaaaattaagaaaactgttactggattgttactcaacattttgaggactagttggtgaaattaaaggcacccatcgtacgcaaaacttttaaa |
43864990 |
T |
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| Q |
101 |
tttgatgttaaattttacaacttaaatttgtatctattgtatccgtttcttatatannnnnnnn-aaaacaaaccaaatattaaatctcaaggtaacttt |
199 |
Q |
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| T |
43864991 |
tttgatgttaaattttacaacttaaatttgtgtctattgtatccgtttcttatatatatttttttaaaacaaaccaaatattaaatctcaaggtaacttt |
43865090 |
T |
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| Q |
200 |
gtttaataataagctgcagtattcttttttgggtcaagtacaaataagtacaaaacttcaaatctaagaagaaaaatatcattgataaatatataaaaaa |
299 |
Q |
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| T |
43865091 |
gtttaataataagctgcagtattcttttttgggtcaagtacaaataagtacaaaacttcaa-tctaagaagaaaaatatcattgataaatatataaaaaa |
43865189 |
T |
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| Q |
300 |
tctgatagtaagcagaaactataagcaaacgttttatctaagtgatagctatggatcataggattaacc |
368 |
Q |
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| T |
43865190 |
tctgatagtaagcagaaactataagcaaacgttttatctaagtgatagctatggatcataggattaacc |
43865258 |
T |
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