View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9997_high_1 (Length: 596)

Name: NF9997_high_1
Description: NF9997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9997_high_1
NF9997_high_1
[»] chr5 (1 HSPs)
chr5 (9-578)||(8830848-8831418)
[»] chr1 (6 HSPs)
chr1 (204-426)||(43989602-43989829)
chr1 (503-578)||(23684828-23684903)
chr1 (288-392)||(44003244-44003356)
chr1 (509-578)||(19566377-19566446)
chr1 (41-89)||(43985044-43985092)
chr1 (362-554)||(42415827-42416019)
[»] chr4 (5 HSPs)
chr4 (503-558)||(45094839-45094894)
chr4 (504-546)||(44668037-44668079)
chr4 (504-546)||(44687363-44687405)
chr4 (335-402)||(45094744-45094813)
chr4 (513-558)||(44642503-44642548)


Alignment Details
Target: chr5 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 9 - 578
Target Start/End: Original strand, 8830848 - 8831418
Alignment:
Q  9 agcagagaaggagtggacggcatagacaaagtgaaggagaaggtgtgggatgacatgattgtggttcgaagaaggaggaggagaagcctgtgaagtgtga 108  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8830848 agcatagaaggagtggacggcatagacacagtgaaggagaaggtgtgggatgacatgattgtggttcgaagaaggaggaggagaagcctgcgaagtgtga 8830947  T
Q  109 ggattttgtttttgttaagacgcatattacttacattaggcagtaccttttaaggaaacgaatctcctcaggtgggtgggttcataagtaaaatctgtca 208  Q
    || |||||||||||||||||| |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8830948 ggtttttgtttttgttaagacacatattacttacattaggcagta-------aggaaacgaatctcctcaggtgggtgggttcataagtaaaatctgtca 8831040  T
Q  209 catgtacctattgtgtttggttcttgacaatttcaatctggttttgacccgaaccaataaacaacgggtgattta----------tgggttggtttgtcg 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||    
T  8831041 catgtacctattgtgtttggttcttgacaatttcaatctggttttgacccgaaccaataaacaacgggtgatttacgggttgggttgggttggtttgtcg 8831140  T
Q  299 ggtacaatggatttatctgggccacttacacccctaactaccagcgagtaattatgcagcagcctattacaaaaggcagcagccagtagtctttgtagac 398  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8831141 ggtacaatggatttatccgggccacttacacccctaactaccagcgagtaattatgcagcagcctattacaaaaggcagcagccagtagtctttgtagac 8831240  T
Q  399 acaagaagtcaataactaaccaaaagcagctggtaaaattttagcatcaaggcaaaaacacaagaaaattaacatcgtggacccaatttgttcttcgact 498  Q
    ||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8831241 acaagaagtcaataactaaccaaaagcagctagtaaaa--ttagcatcaaggcaaaaacacaagaaaattaacatcgcggacccaatttgttcttcgact 8831338  T
Q  499 acaagatcaaagcaaatctactgcctagcatctcattattaacttagctacattgttgaatatcactttaatcatagtag 578  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8831339 acaagatcaaagcaaatctactgcctagcatctcattattaacttagctacattgttgaatatcactttaatcatagtag 8831418  T

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Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 204 - 426
Target Start/End: Original strand, 43989602 - 43989829
Alignment:
Q  204 tgtcacatgtacctattgtgtttggttcttgacaatttcaatctggttttgacccgaaccaataaacaacgggtgattta-----tgggttggtttgtcg 298  Q
    |||||| || ||||||||| |||||||||||||| |||  || |||||||||| ||||| |||||||||| ||| |||||     || |||||||||||     
T  43989602 tgtcacctgaacctattgtttttggttcttgacagtttggatttggttttgactcgaactaataaacaacaggtaatttaccagttgagttggtttgtca 43989701  T
Q  299 ggtacaatggatttatc---tgggccacttacacccctaactaccagcgagtaattatgcagcagcctattacaaaaggcagcagccagtagtctttgta 395  Q
    ||| ||||| ||| |||   |||| |    ||  | || ||||||||| |||||||| | ||||| ||||||||||| ||||||||||||| |||||| |    
T  43989702 ggttcaatgaattcatcatctgggtcg---acgtcactcactaccagcaagtaattaagaagcagtctattacaaaaagcagcagccagtaatctttgca 43989798  T
Q  396 gacacaagaagtcaataactaaccaaaagca 426  Q
    ||||||||||||| ||||||||||| |||||    
T  43989799 gacacaagaagtcgataactaaccagaagca 43989829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 503 - 578
Target Start/End: Complemental strand, 23684903 - 23684828
Alignment:
Q  503 gatcaaagcaaatctactgcctagcatctcattattaacttagctacattgttgaatatcactttaatcatagtag 578  Q
    |||||||| ||||||||  |||||||||||||||||||||||||||||||||||   |||||||||||||||||||    
T  23684903 gatcaaagtaaatctacctcctagcatctcattattaacttagctacattgttgcgaatcactttaatcatagtag 23684828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 392
Target Start/End: Original strand, 44003244 - 44003356
Alignment:
Q  288 ttggtttgtcgggtacaatggatttatctgggccacttacacccctaa--------ctaccagcgagtaattatgcagcagcctattacaaaaggcagca 379  Q
    |||||||||||||| |||||||||||||  | ||||||||||||||||        ||||| || |||||||||||||||| || ||| |||| ||| ||    
T  44003244 ttggtttgtcgggttcaatggatttatcctgtccacttacacccctaacagccagtctacccgcaagtaattatgcagcagtctgttataaaaagcatca 44003343  T
Q  380 gccagtagtcttt 392  Q
    |||||||||||||    
T  44003344 gccagtagtcttt 44003356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 509 - 578
Target Start/End: Original strand, 19566377 - 19566446
Alignment:
Q  509 agcaaatctactgcctagcatctcattattaacttagctacattgttgaatatcactttaatcatagtag 578  Q
    |||||||||||  ||||| |||||||||||||||||||||||||||||   ||  |||||||||||||||    
T  19566377 agcaaatctaccacctagtatctcattattaacttagctacattgttgcgaattgctttaatcatagtag 19566446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 43985044 - 43985092
Alignment:
Q  41 gaaggagaaggtgtgggatgacatgattgtggttcgaagaaggaggagg 89  Q
    ||||||||||| |||||||||||||||  ||| ||||||||||||||||    
T  43985044 gaaggagaaggcgtgggatgacatgatcatgggtcgaagaaggaggagg 43985092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 554
Target Start/End: Complemental strand, 42416019 - 42415827
Alignment:
Q  362 ctattacaaaaggcagcagccagtagtctttgtagacacaagaagtcaataactaaccaaaagcagctggtaaaattttagcatcaaggcaaaaacacaa 461  Q
    ||||||||||| |||||||||||||||||||| |||||  | ||||| |||| |||| | |||||||  ||||||    |  ||||||||||||||||||    
T  42416019 ctattacaaaaagcagcagccagtagtctttgcagacatgacaagtcgataattaactagaagcagcaagtaaaa--ccaatatcaaggcaaaaacacaa 42415922  T
Q  462 -gaaaattaacatcgtggacccaatttgttcttcgactacaagatcaaagcaaatctactgcctagcat-ctcattattaacttagctacattgt 554  Q
      |||| ||| || |  || ||||||||||| ||  || || ||| ||| |||||| ||| |||||||| | ||| || ||||||||||||||||    
T  42415921 taaaaagtaatatagcagaaccaatttgttcatcagctgcaggataaaaacaaatcgactacctagcatccccatcatcaacttagctacattgt 42415827  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 503 - 558
Target Start/End: Original strand, 45094839 - 45094894
Alignment:
Q  503 gatcaaagcaaatctactgcctagcatctcattattaacttagctacattgttgaa 558  Q
    |||||||||||||||||| |||| |||||||||||||||||| |  ||||||||||    
T  45094839 gatcaaagcaaatctactacctaccatctcattattaacttatccgcattgttgaa 45094894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 504 - 546
Target Start/End: Original strand, 44668037 - 44668079
Alignment:
Q  504 atcaaagcaaatctactgcctagcatctcattattaacttagc 546  Q
    ||||||||||||||||  |||||||||||||||||||||||||    
T  44668037 atcaaagcaaatctaccacctagcatctcattattaacttagc 44668079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 504 - 546
Target Start/End: Original strand, 44687363 - 44687405
Alignment:
Q  504 atcaaagcaaatctactgcctagcatctcattattaacttagc 546  Q
    ||||||||||||||||  |||||||||||||||||||||||||    
T  44687363 atcaaagcaaatctaccacctagcatctcattattaacttagc 44687405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 402
Target Start/End: Original strand, 45094744 - 45094813
Alignment:
Q  335 actaccagcgagtaattatgcagcagcctatta--caaaaggcagcagccagtagtctttgtagacacaa 402  Q
    ||||||||| || ||||||||||||| ||||||  ||||| |||||||||||||| ||||| ||||||||    
T  45094744 actaccagcaaggaattatgcagcagtctattaggcaaaaagcagcagccagtagactttgcagacacaa 45094813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 558
Target Start/End: Original strand, 44642503 - 44642548
Alignment:
Q  513 aatctactgcctagcatctcattattaacttagctacattgttgaa 558  Q
    |||||||  ||||||||||||||||||||||||||  |||||||||    
T  44642503 aatctaccacctagcatctcattattaacttagctgtattgttgaa 44642548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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