View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9997_high_5 (Length: 311)
Name: NF9997_high_5
Description: NF9997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9997_high_5 |
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| [»] chr4 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 14176444 - 14176753
Alignment:
| Q |
8 |
agaagcagagatgtagtgtttcatgagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttacca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14176444 |
agaagcagagatgtagtgtttcatgagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttacca |
14176543 |
T |
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| Q |
108 |
cccctcctgtaagagttgctacagaagggggatatcttgatgaagaccctagggttgatggtgagccagtagttgaagatggtgatgatgaagatgttca |
207 |
Q |
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| ||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14176544 |
ctcctcctgtaagagttgccacagaagggggagatcttgatgaagaccctggggttgatggtgagccagtagttgaagatggtgatgatgaagatgttca |
14176643 |
T |
|
| Q |
208 |
ggatggagagcaatccccaacatctcagctcaggagatcaagcagagatcatca------taccaggtaccctagttcggagtacatcctcatcactgat |
301 |
Q |
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| T |
14176644 |
agatggagagcaatccacaacatctcatctcaggagatcaagcagagatcatcatccatctaccaggtaccctagttcggagtacatcctcatcactgat |
14176743 |
T |
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| Q |
302 |
gagggggagc |
311 |
Q |
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|||||||||| |
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| T |
14176744 |
gagggggagc |
14176753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 28609432 - 28609123
Alignment:
| Q |
8 |
agaagcagagatgtagtgtttcatgagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttacca |
107 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28609432 |
agaagcagagatgtagtgtttcataagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttacca |
28609333 |
T |
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| Q |
108 |
cccctcctgtaagagttgctacagaagggggatatcttgatgaagaccctagggttgatggtgagccagtagttgaagatggtgatgatgaagatgttca |
207 |
Q |
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| ||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28609332 |
ctcctcctgtaagagttgccacagaagggggagatcttgatgaagaccctggggttgatggtgagccagtagttgaagatggtgatgatgaagatgttca |
28609233 |
T |
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| Q |
208 |
ggatggagagcaatccccaacatctcagctcaggagatcaagcagagatcatca------taccaggtaccctagttcggagtacatcctcatcactgat |
301 |
Q |
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||||||||||||||| |||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28609232 |
agatggagagcaatccacaacatctcatctcaggagattaagcagagatcatcatccatctaccaggtaccctagttcggagtacatcctcatcactgat |
28609133 |
T |
|
| Q |
302 |
gagggggagc |
311 |
Q |
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|||||||||| |
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| T |
28609132 |
gagggggagc |
28609123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 12933174 - 12933483
Alignment:
| Q |
8 |
agaagcagagatgtagtgtttcatgagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttacca |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12933174 |
agaagcagagatgtagtgtttcatgagcaagaaactatgtcagattctactattctagaaacacctaaacgttatggtaaggttgatcttacacttacca |
12933273 |
T |
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| Q |
108 |
cccctcctgtaagagttgctacagaagggggatatcttgatgaagaccctagggttgatggtgagccagtagttgaagatggtgatgatgaagatgttca |
207 |
Q |
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| ||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12933274 |
ctcctcctgtaagagttgccacagaagggggagatcttgatgaagaccctggggttgatggtgagccagtagttgaagatggtgatgatgaagatgttca |
12933373 |
T |
|
| Q |
208 |
ggatggagagcaatccccaacatctcagctcaggagatcaagcagagatcatca------taccaggtaccctagttcggagtacatcctcatcactgat |
301 |
Q |
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||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
12933374 |
agatggagagcaatccacaacatctcatctcaggagatcaagcagagatcatcatccatctaccaggtaccctagttcggagtacatcctcatcactgat |
12933473 |
T |
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| Q |
302 |
gagggggagc |
311 |
Q |
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|||||||||| |
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| T |
12933474 |
gagggggagc |
12933483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 15298964 - 15299273
Alignment:
| Q |
8 |
agaagcagagatgtagtgtttcatgagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttacca |
107 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
15298964 |
agaagcagagatgtagtgtttcatgagcaagaaactatgtcagattctgctattccagaaacacctaaacgttatggtaaggttgatcttacagttacca |
15299063 |
T |
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| Q |
108 |
cccctcctgtaagagttgctacagaagggggatatcttgatgaagaccctagggttgatggtgagccagtagttgaagatggtgatgatgaagatgttca |
207 |
Q |
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| ||||||||||||||||| |||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
15299064 |
ctcctcctgtaagagttgccacagaagggggagatcttgatgaagaccctggggttaatggtgagttagtagttgaagatggtgatgaggaagatgttca |
15299163 |
T |
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| Q |
208 |
ggatggagagcaatccccaacatctcagctcaggagatcaagcagagatcatca------taccaggtaccctagttcggagtacatcctcatcactgat |
301 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| | |
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| T |
15299164 |
ggatggagagcaatgcccaacatctcagctcaagagatcaagcagagatcatcatccatctaccaggtaccctagtttggagtacattctcatcactgtt |
15299263 |
T |
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| Q |
302 |
gagggggagc |
311 |
Q |
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|||||||||| |
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| T |
15299264 |
gagggggagc |
15299273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 224
Target Start/End: Complemental strand, 38995074 - 38994875
Alignment:
| Q |
24 |
tgtttcatgagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttaccacccctcctgtaagagt |
123 |
Q |
| |
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||||||||||||||||||||||| || ||| | |||||| ||||||||||| | |||||||||||| |||||||| ||||| |||||| ||||||| |
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| T |
38995074 |
tgtttcatgagcaagaaactatgacaaatt-tactattcctgaaacacctaagcacggtggtaaggttgaccttacactaaccactcctcctataagagt |
38994976 |
T |
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| Q |
124 |
tgctacagaagggggatatcttgatgaagaccctagggttgatggtgagccagtagttgaagatggtgatgatgaagatgttcaggatggagagcaatcc |
223 |
Q |
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||| | |||||||||| |||||||| || ||||||||||||||||||||||| | |||||||||||||||| ||| | | ||||||||||||||||| |
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| T |
38994975 |
tgccaaagaagggggagatcttgattaaaaccctagggttgatggtgagccaacaattgaagatggtgatgacgaaaaaggataggatggagagcaatcc |
38994876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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