View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9997_high_6 (Length: 254)
Name: NF9997_high_6
Description: NF9997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9997_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 29 - 252
Target Start/End: Original strand, 17613193 - 17613418
Alignment:
| Q |
29 |
caaattacaaggactaaaggtgaaattgaaatatttaaggatatctatcagtatcacgatatttaaataccttctcagatatttcagttaatacatttct |
128 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
17613193 |
caaattacaaggactaaaggtgaatttgaaatatttaaggatatctatcagtatcacgatatttaaataccttctcagatatttcagttaatacattcct |
17613292 |
T |
|
| Q |
129 |
ttatccttta-aagctaatgttattctaccac-nnnnnnnggacttgatacagaaaagggaagcttgtcaccacgatcatcaatcgactccacacatagt |
226 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
17613293 |
ttatcctttataagctaatgatattctaccacttttttttggacttgatacagaaaagggaagcttgtcaccacgatcatcaatcgactcaacacacagt |
17613392 |
T |
|
| Q |
227 |
aataaaacctttttcagctttgataa |
252 |
Q |
| |
|
|||||||||||||||| ||||||||| |
|
|
| T |
17613393 |
aataaaacctttttcaactttgataa |
17613418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 29 - 252
Target Start/End: Original strand, 17626378 - 17626603
Alignment:
| Q |
29 |
caaattacaaggactaaaggtgaaattgaaatatttaaggatatctatcag--tatcacgatatttaaataccttctcagatatttcagttaatacattt |
126 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17626378 |
caaattacaaagactagaggtgaaattgaaatatttaaggatatctatgcgcctatcacgatatttaaataccttct-ggatatttcagttaatacattt |
17626476 |
T |
|
| Q |
127 |
ctttatcctttaaagctaatgttattctaccac-nnnnnnnggacttgatacagaaaagggaagcttgtcaccacgatcatcaatcgactccacacatag |
225 |
Q |
| |
|
|||||||||||| ||||||| |||| |||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| || |
|
|
| T |
17626477 |
ctttatcctttatggctaatgatattgtaccacttttttttggacttgatacagaaaagggaagcgtgtcaccacgatcatcagtcgactcgacacacag |
17626576 |
T |
|
| Q |
226 |
taataaaacctttttcagctttgataa |
252 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
17626577 |
taataaaacctttttcagctttgataa |
17626603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 29 - 252
Target Start/End: Original strand, 17670774 - 17670999
Alignment:
| Q |
29 |
caaattacaaggactaaaggtgaaattgaaatatttaaggatatctatcag--tatcacgatatttaaataccttctcagatatttcagttaatacattt |
126 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
17670774 |
caaattacaaagactagaggtgaaattgaaatatttaaggatatctatgcgcctatcacgatatttaaataccttct-ggatatttcagtttatacattt |
17670872 |
T |
|
| Q |
127 |
ctttatcctttaaagctaatgttattctaccac-nnnnnnnggacttgatacagaaaagggaagcttgtcaccacgatcatcaatcgactccacacatag |
225 |
Q |
| |
|
|||||||||||| ||||||| || | |||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| || |
|
|
| T |
17670873 |
ctttatcctttatggctaatgatactgtaccacttttttttggacttgatacagaaaagggaagcgtgtcaccacgatcatcagtcgactctacacacag |
17670972 |
T |
|
| Q |
226 |
taataaaacctttttcagctttgataa |
252 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
17670973 |
taataaaacctttttcagctttgataa |
17670999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 29 - 159
Target Start/End: Original strand, 17692848 - 17692977
Alignment:
| Q |
29 |
caaattacaaggactaaaggtgaaattgaaatatttaaggatatctatcagtatcacgatatttaaataccttctcagatatttcagttaatacatttct |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17692848 |
caaattacaaggactaaaggtgaaattgaaatatttaaggatatctatccctatcacgatatttaaataccttct-tgatatttcagttaatacatttct |
17692946 |
T |
|
| Q |
129 |
ttatcctttaaagctaatgttattctaccac |
159 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| |
|
|
| T |
17692947 |
ttatcctttatagctaatgatattctaccac |
17692977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 17693093 - 17693151
Alignment:
| Q |
194 |
tcaccacgatcatcaatcgactccacacatagtaataaaacctttttcagctttgataa |
252 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
17693093 |
tcaccacgatcatcaatcgactccacacacagtaataaaacctttttcaactttgataa |
17693151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University