View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9997_high_7 (Length: 241)
Name: NF9997_high_7
Description: NF9997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9997_high_7 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 19153357 - 19153569
Alignment:
| Q |
12 |
ttgacaagtacaaacaattacattgtttagttcaatagaataaagtact--ccaaagttacaacatagaccagaaacttacaacatcgaaaagatgttct |
109 |
Q |
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| T |
19153357 |
ttgacaagtacaaatggttacattgtggagttccatagaataaactactatcctaaattaaaacaaagaccagaaacttacaacattgaagagatgttct |
19153456 |
T |
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| Q |
110 |
ttgagggttggtatagatgatggaatctgcctggtgaggtaaataacacaagggttgttaaaaataagaagcactaaaagagcaaggaatgggataaact |
209 |
Q |
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| T |
19153457 |
ttgagggttggtatagaagatggaatctgcctggtgaggt-aattacacaagggtttttcaaaataagaagcactaaaagagcaaggaatgggaaaaact |
19153555 |
T |
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| Q |
210 |
tgttcgcaccttaa |
223 |
Q |
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| T |
19153556 |
tgttcgctccttaa |
19153569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 13601961 - 13601816
Alignment:
| Q |
1 |
attattgaatgttgacaagtacaaacaattacattgtttagttcaatagaataaagtactccaaagttacaacatagaccagaaacttacaacatcgaaa |
100 |
Q |
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| T |
13601961 |
attattgcatgtcgacaagtacaaacgattacattgttgagttcaatagaataaactacaccaaagggacaacatagaccagaaacttacaacattgaaa |
13601862 |
T |
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| Q |
101 |
agatgttctttgagggttggtatagatgatggaatctgcctggtga |
146 |
Q |
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| T |
13601861 |
agatgttctttgagggttggtatagatgatagaatctgcctggtga |
13601816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 130618 - 130473
Alignment:
| Q |
1 |
attattgaatgttgacaagtacaaacaattacattgtttagttcaatagaataaagtactccaaagttacaacatagaccagaaacttacaacatcgaaa |
100 |
Q |
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||||||| |||| ||||||||||||| ||||||||||| |||||||||||||||| ||| |||||| ||||||||||||||||||||||||||| |||| |
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| T |
130618 |
attattgcatgtcgacaagtacaaacgattacattgttgagttcaatagaataaactacaccaaagggacaacatagaccagaaacttacaacattgaaa |
130519 |
T |
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| Q |
101 |
agatgttctttgagggttggtatagatgatggaatctgcctggtga |
146 |
Q |
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| T |
130518 |
agatgttctttgagggttggtatagatgatagaatctgcctggtga |
130473 |
T |
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