View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9997_low_1 (Length: 596)
Name: NF9997_low_1
Description: NF9997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9997_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 9 - 578
Target Start/End: Original strand, 8830848 - 8831418
Alignment:
| Q |
9 |
agcagagaaggagtggacggcatagacaaagtgaaggagaaggtgtgggatgacatgattgtggttcgaagaaggaggaggagaagcctgtgaagtgtga |
108 |
Q |
| |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8830848 |
agcatagaaggagtggacggcatagacacagtgaaggagaaggtgtgggatgacatgattgtggttcgaagaaggaggaggagaagcctgcgaagtgtga |
8830947 |
T |
|
| Q |
109 |
ggattttgtttttgttaagacgcatattacttacattaggcagtaccttttaaggaaacgaatctcctcaggtgggtgggttcataagtaaaatctgtca |
208 |
Q |
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|| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8830948 |
ggtttttgtttttgttaagacacatattacttacattaggcagta-------aggaaacgaatctcctcaggtgggtgggttcataagtaaaatctgtca |
8831040 |
T |
|
| Q |
209 |
catgtacctattgtgtttggttcttgacaatttcaatctggttttgacccgaaccaataaacaacgggtgattta----------tgggttggtttgtcg |
298 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8831041 |
catgtacctattgtgtttggttcttgacaatttcaatctggttttgacccgaaccaataaacaacgggtgatttacgggttgggttgggttggtttgtcg |
8831140 |
T |
|
| Q |
299 |
ggtacaatggatttatctgggccacttacacccctaactaccagcgagtaattatgcagcagcctattacaaaaggcagcagccagtagtctttgtagac |
398 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8831141 |
ggtacaatggatttatccgggccacttacacccctaactaccagcgagtaattatgcagcagcctattacaaaaggcagcagccagtagtctttgtagac |
8831240 |
T |
|
| Q |
399 |
acaagaagtcaataactaaccaaaagcagctggtaaaattttagcatcaaggcaaaaacacaagaaaattaacatcgtggacccaatttgttcttcgact |
498 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8831241 |
acaagaagtcaataactaaccaaaagcagctagtaaaa--ttagcatcaaggcaaaaacacaagaaaattaacatcgcggacccaatttgttcttcgact |
8831338 |
T |
|
| Q |
499 |
acaagatcaaagcaaatctactgcctagcatctcattattaacttagctacattgttgaatatcactttaatcatagtag |
578 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8831339 |
acaagatcaaagcaaatctactgcctagcatctcattattaacttagctacattgttgaatatcactttaatcatagtag |
8831418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 204 - 426
Target Start/End: Original strand, 43989602 - 43989829
Alignment:
| Q |
204 |
tgtcacatgtacctattgtgtttggttcttgacaatttcaatctggttttgacccgaaccaataaacaacgggtgattta-----tgggttggtttgtcg |
298 |
Q |
| |
|
|||||| || ||||||||| |||||||||||||| ||| || |||||||||| ||||| |||||||||| ||| ||||| || ||||||||||| |
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| T |
43989602 |
tgtcacctgaacctattgtttttggttcttgacagtttggatttggttttgactcgaactaataaacaacaggtaatttaccagttgagttggtttgtca |
43989701 |
T |
|
| Q |
299 |
ggtacaatggatttatc---tgggccacttacacccctaactaccagcgagtaattatgcagcagcctattacaaaaggcagcagccagtagtctttgta |
395 |
Q |
| |
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||| ||||| ||| ||| |||| | || | || ||||||||| |||||||| | ||||| ||||||||||| ||||||||||||| |||||| | |
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| T |
43989702 |
ggttcaatgaattcatcatctgggtcg---acgtcactcactaccagcaagtaattaagaagcagtctattacaaaaagcagcagccagtaatctttgca |
43989798 |
T |
|
| Q |
396 |
gacacaagaagtcaataactaaccaaaagca |
426 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| |
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|
| T |
43989799 |
gacacaagaagtcgataactaaccagaagca |
43989829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 503 - 578
Target Start/End: Complemental strand, 23684903 - 23684828
Alignment:
| Q |
503 |
gatcaaagcaaatctactgcctagcatctcattattaacttagctacattgttgaatatcactttaatcatagtag |
578 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
23684903 |
gatcaaagtaaatctacctcctagcatctcattattaacttagctacattgttgcgaatcactttaatcatagtag |
23684828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 392
Target Start/End: Original strand, 44003244 - 44003356
Alignment:
| Q |
288 |
ttggtttgtcgggtacaatggatttatctgggccacttacacccctaa--------ctaccagcgagtaattatgcagcagcctattacaaaaggcagca |
379 |
Q |
| |
|
|||||||||||||| ||||||||||||| | |||||||||||||||| ||||| || |||||||||||||||| || ||| |||| ||| || |
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| T |
44003244 |
ttggtttgtcgggttcaatggatttatcctgtccacttacacccctaacagccagtctacccgcaagtaattatgcagcagtctgttataaaaagcatca |
44003343 |
T |
|
| Q |
380 |
gccagtagtcttt |
392 |
Q |
| |
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||||||||||||| |
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| T |
44003344 |
gccagtagtcttt |
44003356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 509 - 578
Target Start/End: Original strand, 19566377 - 19566446
Alignment:
| Q |
509 |
agcaaatctactgcctagcatctcattattaacttagctacattgttgaatatcactttaatcatagtag |
578 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||||| |
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|
| T |
19566377 |
agcaaatctaccacctagtatctcattattaacttagctacattgttgcgaattgctttaatcatagtag |
19566446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 43985044 - 43985092
Alignment:
| Q |
41 |
gaaggagaaggtgtgggatgacatgattgtggttcgaagaaggaggagg |
89 |
Q |
| |
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||||||||||| ||||||||||||||| ||| |||||||||||||||| |
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| T |
43985044 |
gaaggagaaggcgtgggatgacatgatcatgggtcgaagaaggaggagg |
43985092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 554
Target Start/End: Complemental strand, 42416019 - 42415827
Alignment:
| Q |
362 |
ctattacaaaaggcagcagccagtagtctttgtagacacaagaagtcaataactaaccaaaagcagctggtaaaattttagcatcaaggcaaaaacacaa |
461 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| | ||||| |||| |||| | ||||||| |||||| | |||||||||||||||||| |
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| T |
42416019 |
ctattacaaaaagcagcagccagtagtctttgcagacatgacaagtcgataattaactagaagcagcaagtaaaa--ccaatatcaaggcaaaaacacaa |
42415922 |
T |
|
| Q |
462 |
-gaaaattaacatcgtggacccaatttgttcttcgactacaagatcaaagcaaatctactgcctagcat-ctcattattaacttagctacattgt |
554 |
Q |
| |
|
|||| ||| || | || ||||||||||| || || || ||| ||| |||||| ||| |||||||| | ||| || |||||||||||||||| |
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|
| T |
42415921 |
taaaaagtaatatagcagaaccaatttgttcatcagctgcaggataaaaacaaatcgactacctagcatccccatcatcaacttagctacattgt |
42415827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 503 - 558
Target Start/End: Original strand, 45094839 - 45094894
Alignment:
| Q |
503 |
gatcaaagcaaatctactgcctagcatctcattattaacttagctacattgttgaa |
558 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||| | |||||||||| |
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|
| T |
45094839 |
gatcaaagcaaatctactacctaccatctcattattaacttatccgcattgttgaa |
45094894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 504 - 546
Target Start/End: Original strand, 44668037 - 44668079
Alignment:
| Q |
504 |
atcaaagcaaatctactgcctagcatctcattattaacttagc |
546 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
44668037 |
atcaaagcaaatctaccacctagcatctcattattaacttagc |
44668079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 504 - 546
Target Start/End: Original strand, 44687363 - 44687405
Alignment:
| Q |
504 |
atcaaagcaaatctactgcctagcatctcattattaacttagc |
546 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
44687363 |
atcaaagcaaatctaccacctagcatctcattattaacttagc |
44687405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 402
Target Start/End: Original strand, 45094744 - 45094813
Alignment:
| Q |
335 |
actaccagcgagtaattatgcagcagcctatta--caaaaggcagcagccagtagtctttgtagacacaa |
402 |
Q |
| |
|
||||||||| || ||||||||||||| |||||| ||||| |||||||||||||| ||||| |||||||| |
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|
| T |
45094744 |
actaccagcaaggaattatgcagcagtctattaggcaaaaagcagcagccagtagactttgcagacacaa |
45094813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 558
Target Start/End: Original strand, 44642503 - 44642548
Alignment:
| Q |
513 |
aatctactgcctagcatctcattattaacttagctacattgttgaa |
558 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||| |
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|
| T |
44642503 |
aatctaccacctagcatctcattattaacttagctgtattgttgaa |
44642548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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