View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9997_low_2 (Length: 481)
Name: NF9997_low_2
Description: NF9997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9997_low_2 |
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| [»] scaffold0006 (5 HSPs) |
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| [»] scaffold0291 (1 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 424; Significance: 0; HSPs: 5)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 130784 - 131246
Alignment:
| Q |
1 |
agagcggtggtgatggtttcgaaattctaacgaggcagtggcagaacccaatccctctagttccatggaaggaagcgaatcctctgacacctgaaccgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
130784 |
agagcggtggtgatggtttcgaaattctaacgaggcagtggcagaacccaatccctctagttccatggaaggaagcgaatcctctgacacctgaaccgtt |
130883 |
T |
|
| Q |
101 |
gggaagcatcaatctcctctacgcaaaatttccttatcatatatcttcttcagaaaaacaataaattgactacttccatgttcttttgtactttctcaca |
200 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
130884 |
gggaagcatcaatctcctctatgcaaaatttccttatcatatatcttcttcagaaaaacaataaattgactagttccatgttcttttgtactttttcaca |
130983 |
T |
|
| Q |
201 |
ttgtgcagaaccttctaatgataacttcctgctaaaagtgacaataagaactcaacaacaggacaaatatagggaatgtttgtgattcctttttgcacaa |
300 |
Q |
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|
||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
130984 |
ttgtgcagaacctgctaatgataacttcctgctaaaagcgacaataagaactgaacaacaggacaaatatagggaatgtttgtgattcctttttgcacaa |
131083 |
T |
|
| Q |
301 |
gcattttcatgccattaaacaatattgatgatcggtttctcagtttttctcccaatcttatctaaatgattatacaacctatggactctcacaaactatg |
400 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
131084 |
gcattttcatgccattaaac---attgatgatcggtttctcagtttttctcccaatcttatctaaatgattatacaacctatggactctcacaaactatg |
131180 |
T |
|
| Q |
401 |
agcacatataggttattagctgactaggtgcccttgctcaacacaaccttcaagtattcgctctct |
466 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
131181 |
agcacatataggttattagctgactaggtgcccttgctcaacacaaccttcaagtattcactctct |
131246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 82111 - 82193
Alignment:
| Q |
38 |
gtggcagaacccaatccctctagttccatggaaggaagcgaatcctctgacacctgaaccgttgggaagcatcaatctcctct |
120 |
Q |
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|||||| || || |||||||| ||||||||||||||||||||||||| ||| ||||||||| ||||| |||||||||||||| |
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| T |
82111 |
gtggcaaaatccgatccctctggttccatggaaggaagcgaatcctccaacagctgaaccgtggggaatcatcaatctcctct |
82193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 194825 - 194870
Alignment:
| Q |
198 |
acattgtgcagaaccttctaatgataacttcctgctaaaagtgaca |
243 |
Q |
| |
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||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
194825 |
acattgtacagaacctgctaatgataacttcctgctaaaagtgaca |
194870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 125322 - 125370
Alignment:
| Q |
198 |
acattgtgcagaaccttctaatgataacttcctgctaaaagtgacaata |
246 |
Q |
| |
|
||||||| || ||||| |||||||||||||||||||||||||||||||| |
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| T |
125322 |
acattgtacaaaacctactaatgataacttcctgctaaaagtgacaata |
125370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 395
Target Start/End: Original strand, 125448 - 125477
Alignment:
| Q |
366 |
atgattatacaacctatggactctcacaaa |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
125448 |
atgattatacaacctatggactctcacaaa |
125477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 13602127 - 13602589
Alignment:
| Q |
1 |
agagcggtggtgatggtttcgaaattctaacgaggcagtggcagaacccaatccctctagttccatggaaggaagcgaatcctctgacacctgaaccgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13602127 |
agagcggtggtgatggtttcgaaattctaacgaggcagtggcagaacccaatccctctagttccatggaaggaagcgaatcctctgacacctgaaccgtt |
13602226 |
T |
|
| Q |
101 |
gggaagcatcaatctcctctacgcaaaatttccttatcatatatcttcttcagaaaaacaataaattgactacttccatgttcttttgtactttctcaca |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
13602227 |
gggaagcatcaatctcctctatgcaaaatttccttatcatatatcttcttcagaaaaacaataaattgactagttccatgttcttttgtactttttcaca |
13602326 |
T |
|
| Q |
201 |
ttgtgcagaaccttctaatgataacttcctgctaaaagtgacaataagaactcaacaacaggacaaatatagggaatgtttgtgattcctttttgcacaa |
300 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13602327 |
ttgtgcagaacctgctaatgataacttcctgctaaaagcgacaataagaactgaacaacaggacaaatatagggaatgtttgtgattcctttttgcacaa |
13602426 |
T |
|
| Q |
301 |
gcattttcatgccattaaacaatattgatgatcggtttctcagtttttctcccaatcttatctaaatgattatacaacctatggactctcacaaactatg |
400 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13602427 |
gcattttcatgccattaaac---attgatgatcggtttctcagtttttctcccaatcttatctaaatgattatacaacctatggactctcacaaactatg |
13602523 |
T |
|
| Q |
401 |
agcacatataggttattagctgactaggtgcccttgctcaacacaaccttcaagtattcgctctct |
466 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13602524 |
agcacatataggttattagctgactaggtgcccttgctcaacacaaccttcaagtattcactctct |
13602589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 425 - 466
Target Start/End: Complemental strand, 23833668 - 23833627
Alignment:
| Q |
425 |
taggtgcccttgctcaacacaaccttcaagtattcgctctct |
466 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||| |
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|
| T |
23833668 |
taggttcccttgctcaacacaaccttcaagtattcactctct |
23833627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 13487572 - 13487606
Alignment:
| Q |
214 |
tctaatgataacttcctgctaaaagtgacaataag |
248 |
Q |
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|
|||||||||||||||||| |||||||||||||||| |
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|
| T |
13487572 |
tctaatgataacttcctgttaaaagtgacaataag |
13487606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 21770132 - 21770196
Alignment:
| Q |
182 |
tcttttgtactttctcacattgtgcagaaccttctaatgataacttcctgctaaaagtgacaata |
246 |
Q |
| |
|
|||||||||| || | ||||||| |||||||| ||||||||||||||||| ||| ||||| |||| |
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|
| T |
21770132 |
tcttttgtacgtttttacattgtacagaacctgctaatgataacttcctggtaatagtgagaata |
21770196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 395
Target Start/End: Original strand, 21770274 - 21770303
Alignment:
| Q |
366 |
atgattatacaacctatggactctcacaaa |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
21770274 |
atgattatacaacctatggactctcacaaa |
21770303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 432 - 466
Target Start/End: Complemental strand, 4800041 - 4800007
Alignment:
| Q |
432 |
ccttgctcaacacaaccttcaagtattcgctctct |
466 |
Q |
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|
|||||||||||||||||||||||||||| |||||| |
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| T |
4800041 |
ccttgctcaacacaaccttcaagtattcactctct |
4800007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 456
Target Start/End: Complemental strand, 4800084 - 4800047
Alignment:
| Q |
419 |
gctgactaggtgcccttgctcaacacaaccttcaagta |
456 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| |
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|
| T |
4800084 |
gctgattaggttcccttgctcaacacaaccttcaagta |
4800047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 405
Target Start/End: Complemental strand, 17845 - 17805
Alignment:
| Q |
366 |
atgattatacaacctatggactctc-acaaactatgagcac |
405 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
17845 |
atgattatacaacctatggactgtcaacaaactatgagcac |
17805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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