View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9997_low_3 (Length: 341)
Name: NF9997_low_3
Description: NF9997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9997_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 20259606 - 20259279
Alignment:
| Q |
1 |
tctctataaggacaagggtaacttctattcaacacatatcggaacatggtgggtgatggaaatttttcgccttgtctataatgtcgtttctactggttat |
100 |
Q |
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||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20259606 |
tctctataaggacaagggtaacttctatttagcacatatcggcacatggtgggtgatggaaatttttcgccttgtctataatgtcgtttctactggttat |
20259507 |
T |
|
| Q |
101 |
tttgactcacctatgtctaaaactctcgtttccttcatccccggagttggaactcccaccatctttaaggaacgtagacctgtaagcctttgcaatattg |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
20259506 |
tttgactcgcctatgtctaaaactctcgtttccttcatccccggagttggaactcccaccatctttaaggaacttagacctgtaagcctttgcaacattg |
20259407 |
T |
|
| Q |
201 |
tctacaaaatcattgtcaaagtcatggttaaccggctcttcaacatatttctcacctcttatttgcatatgatgttctcctcttcaacaaggcaaaaaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20259406 |
tctacaaaatcattgtcaaagtcatggttaaccggctcttcaacatatttctcacctcttatttgcatatgatgttctcctcttcaacaaggcaaaaaac |
20259307 |
T |
|
| Q |
301 |
tatcaactcaaattcattactaatctct |
328 |
Q |
| |
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||||||||||||| |||||||||||||| |
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| T |
20259306 |
tatcaactcaaatccattactaatctct |
20259279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 299
Target Start/End: Complemental strand, 32874386 - 32874331
Alignment:
| Q |
244 |
catatttctcacctcttatttgcatatgatgttctcctcttcaacaaggcaaaaaa |
299 |
Q |
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||||| |||||||| | |||||||||||||| |||||||||| |||||||||||| |
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| T |
32874386 |
catatatctcaccttctctttgcatatgatgtcctcctcttcaccaaggcaaaaaa |
32874331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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