View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9997_low_8 (Length: 239)
Name: NF9997_low_8
Description: NF9997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9997_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 17693145 - 17693259
Alignment:
| Q |
1 |
ttgataattacttataagtttattaagttatgcgattctaaccaaccagttttgttctaggtgattctgtaataaactattccacctgatactcaatgga |
100 |
Q |
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||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17693145 |
ttgataactacttatatgtttattcagttatgcgattctaaccaaccagttttgttctaggtgattctgtaataaactattccacctgatactcaatgga |
17693244 |
T |
|
| Q |
101 |
catcaccaaagcata |
115 |
Q |
| |
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|||||||||| |||| |
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| T |
17693245 |
catcaccaaaccata |
17693259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 17626597 - 17626711
Alignment:
| Q |
1 |
ttgataattacttataagtttattaagttatgcgattctaaccaaccagttttgttctaggtgattctgtaataaactattccacctgatactcaatgga |
100 |
Q |
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||||||| |||||||| || |||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17626597 |
ttgataactacttatatgtctattcagttatgggactctaaccaaccagttttgttctaggtgattctgtaataaactattccacctgatactcaatgga |
17626696 |
T |
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| Q |
101 |
catcaccaaagcata |
115 |
Q |
| |
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||||||||||||||| |
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| T |
17626697 |
catcaccaaagcata |
17626711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 17613412 - 17613526
Alignment:
| Q |
1 |
ttgataattacttataagtttattaagttatgcgattctaaccaaccagttttgttctaggtgattctgtaataaactattccacctgatactcaatgga |
100 |
Q |
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||||||| |||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
17613412 |
ttgataactacttatatgtgtattcagttatgcgattctaaccaaccagttttgttctaggtgattctgtagtaaactactccacctgatactcaatggg |
17613511 |
T |
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| Q |
101 |
catcaccaaagcata |
115 |
Q |
| |
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||||||||||||||| |
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| T |
17613512 |
catcaccaaagcata |
17613526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 17670993 - 17671107
Alignment:
| Q |
1 |
ttgataattacttataagtttattaagttatgcgattctaaccaaccagttttgttctaggtgattctgtaataaactattccacctgatactcaatgga |
100 |
Q |
| |
|
||||||| ||||| || || |||| ||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17670993 |
ttgataactacttctatgtctattcagttatgggactcaaaccaaccagttttgttctaggtgattctgtaataaactattccacctgatactcaatgga |
17671092 |
T |
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| Q |
101 |
catcaccaaagcata |
115 |
Q |
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||||||||||||||| |
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| T |
17671093 |
catcaccaaagcata |
17671107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 17613628 - 17613705
Alignment:
| Q |
148 |
gatgacggtgtctttacgccttaatttcattgctaacagacatatatcatgcagaacctagtgtacagggattgatat |
225 |
Q |
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| T |
17613628 |
gatgatggtgtctttacgccttaatttcagtgctaacggacatatatcacgcagaacctagtgtacagggattgatat |
17613705 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 17671209 - 17671286
Alignment:
| Q |
148 |
gatgacggtgtctttacgccttaatttcattgctaacagacatatatcatgcagaacctagtgtacagggattgatat |
225 |
Q |
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| T |
17671209 |
gatgatggtgtcttttcgccttagtttcagtgctaacggacatctatcatgcagaacctagtgtacagggattgatat |
17671286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 17693361 - 17693438
Alignment:
| Q |
148 |
gatgacggtgtctttacgccttaatttcattgctaacagacatatatcatgcagaacctagtgtacagggattgatat |
225 |
Q |
| |
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||||| |||||||||| |||||||||||| ||||||| | | | ||||||||||||| |||||||||||| ||||||| |
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| T |
17693361 |
gatgatggtgtctttatgccttaatttcagtgctaacgggcgtctatcatgcagaacttagtgtacagggtttgatat |
17693438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 143
Target Start/End: Original strand, 17613540 - 17613569
Alignment:
| Q |
114 |
tatggtgcttgtgaagagtgacctaacctt |
143 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
17613540 |
tatggtgcttgtgaagagtgacctaacctt |
17613569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 143
Target Start/End: Original strand, 17626725 - 17626754
Alignment:
| Q |
114 |
tatggtgcttgtgaagagtgacctaacctt |
143 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
17626725 |
tatggtgcttgtgaagagtgacctaacctt |
17626754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 143
Target Start/End: Original strand, 17671121 - 17671150
Alignment:
| Q |
114 |
tatggtgcttgtgaagagtgacctaacctt |
143 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
17671121 |
tatggtgcttgtgaagagtgacctaacctt |
17671150 |
T |
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