View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9998_high_13 (Length: 272)
Name: NF9998_high_13
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9998_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 4 - 257
Target Start/End: Original strand, 4039928 - 4040181
Alignment:
| Q |
4 |
aactaaaaagtatcattaaatcaagtagattactcgattggtgacaccgaaagagattcaagcagaaggtctaggattcgaatcatggatttgcaatatc |
103 |
Q |
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| T |
4039928 |
aactaaaaagtatcattggatcaagtagattactcgattggtgacaccgaaagagattcaagcagaaggtctaggattcgaatcatggatttgtaatatc |
4040027 |
T |
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| Q |
104 |
taatttctaatcgaagtgttttaatttcattcattttagaacttaaaagtatcaatgtatcattgagtcaagtaggtagttcgatttgtgagttaaaaga |
203 |
Q |
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|||||| |||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4040028 |
taatttttaattaaagtgttttaatttcattcattttaaaacttagaagtatcaatgtatcattgagtcaaataggtagttcgatttgtgagttaaaaga |
4040127 |
T |
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| Q |
204 |
tgcagtaggaggttcaagtaccaggtcttggattaaactctagaaactaatata |
257 |
Q |
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||| ||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
4040128 |
cacagaaggaggttcaagtaccaagtcttggattaaactctagaaacaaatata |
4040181 |
T |
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