View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9998_high_15 (Length: 254)
Name: NF9998_high_15
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9998_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 5703761 - 5703979
Alignment:
| Q |
19 |
attatacccctattaataaatnnnnnnntatccttccggccaggtcgataaatattttgcatgaattccttcnnnnnnnttgcatgaataacatggttag |
118 |
Q |
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| T |
5703761 |
attatacccctattaataaataaaaaattatccttccggcctggtcgataaatattttgcatgaattccctcaaaaaa-----aaaaaaaacatggttag |
5703855 |
T |
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| Q |
119 |
aaaatcctctnnnnnnncgtggttcaaactaaatgtaagtttttaaggaaaataattatttacttaatatatgcttttgtaaataaagattcttatctta |
218 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5703856 |
aaaatcctctaaaaaaacgtggttcaaactaaatgtaagtttttaaggaaaataattatttacttaatatatgcttttgtaaataaagattcttatctta |
5703955 |
T |
|
| Q |
219 |
atttaatctaaacaatgatctgtg |
242 |
Q |
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|||||||||||||||||||||||| |
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| T |
5703956 |
atttaatctaaacaatgatctgtg |
5703979 |
T |
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