View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9998_high_19 (Length: 224)

Name: NF9998_high_19
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9998_high_19
NF9998_high_19
[»] chr2 (9 HSPs)
chr2 (17-205)||(8403626-8403814)
chr2 (22-205)||(8429486-8429669)
chr2 (24-128)||(8376193-8376297)
chr2 (24-128)||(8395879-8395983)
chr2 (24-128)||(8405589-8405693)
chr2 (53-128)||(8430889-8430964)
chr2 (24-128)||(8411709-8411813)
chr2 (24-128)||(8433807-8433911)
chr2 (53-128)||(8416822-8416897)
[»] chr4 (2 HSPs)
chr4 (54-205)||(55335978-55336129)
chr4 (24-205)||(55330516-55330697)
[»] scaffold1738 (1 HSPs)
scaffold1738 (24-128)||(25-129)


Alignment Details
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 8403626 - 8403814
Alignment:
Q  17 gacatcagattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattc 116  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8403626 gacatcagattttgaggcaagctctctcatctgcattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcatcattttctcttttattc 8403725  T
Q  117 aaatctttctcttcaatagtttgttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccatacc 205  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8403726 aaatctttctcttcaataatttcttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccatacc 8403814  T

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Target: chr2; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 22 - 205
Target Start/End: Original strand, 8429486 - 8429669
Alignment:
Q  22 cagattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatc 121  Q
    ||||||| |||||||  |||||||||||||||||||||||||||||||  || ||||||||||| |||||||| || || ||||||||||||||||||||    
T  8429486 cagatttcgaggcaaattctctcatctccattacacttcttcccaattttaaagcaatcttcatttcaaacacttccccgttttctcttttattcaaatc 8429585  T
Q  122 tttctcttcaatagtttgttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccatacc 205  Q
    ||| ||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||    
T  8429586 tttatcttcaatagtttcttcaaccgtctcttccaaaagctcaaaaaatccactacagtttctatacatctgaaacatcatacc 8429669  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 8376297 - 8376193
Alignment:
Q  24 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 123  Q
    |||||||||||||| || |||| |||   ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  |||||||    
T  8376297 gattttgaggcaagttccctcagctctgatacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctt 8376198  T
Q  124 tctct 128  Q
    |||||    
T  8376197 tctct 8376193  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 8395983 - 8395879
Alignment:
Q  24 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 123  Q
    |||||||| ||||| || |||| |||   ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  |||||||    
T  8395983 gattttgatgcaagttccctcagctctgatacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctt 8395884  T
Q  124 tctct 128  Q
    |||||    
T  8395883 tctct 8395879  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 8405589 - 8405693
Alignment:
Q  24 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 123  Q
    |||||||| ||||| || |||| |||   ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  |||||||    
T  8405589 gattttgatgcaagttccctcagctcagatacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctt 8405688  T
Q  124 tctct 128  Q
    |||||    
T  8405689 tctct 8405693  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 8430889 - 8430964
Alignment:
Q  53 tacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctct 128  Q
    ||||||| ||||||||||||| || |||||||| ||||| | ||| |||||||||||||| |  ||||||||||||    
T  8430889 tacactttttcccaattgcaaagccatcttcatttcaaatagctctccattttctcttttctctaaatctttctct 8430964  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 8411709 - 8411813
Alignment:
Q  24 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 123  Q
    |||||||||||||| || |||| |||  | ||||||||||||||| |||| || || ||||  ||||| | ||| |||||||||||||| |  |||||||    
T  8411709 gattttgaggcaagttccctcagctctgtgacacttcttcccaatcgcaaagccattttcaattcaaatagctctccattttctcttttctctaaatctt 8411808  T
Q  124 tctct 128  Q
    |||||    
T  8411809 tctct 8411813  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 8433807 - 8433911
Alignment:
Q  24 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 123  Q
    |||||||||||||| || |||| |||  | ||||||||||||||| |||| || || ||||  ||||| | ||| |||||||||||||| |  |||||||    
T  8433807 gattttgaggcaagttccctcagctctgtgacacttcttcccaatcgcaaagccattttcaattcaaatagctctccattttctcttttctctaaatctt 8433906  T
Q  124 tctct 128  Q
    |||||    
T  8433907 tctct 8433911  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 8416822 - 8416897
Alignment:
Q  53 tacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctct 128  Q
    |||| |||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  ||||||||||||    
T  8416822 tacatttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctttctct 8416897  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 205
Target Start/End: Original strand, 55335978 - 55336129
Alignment:
Q  54 acacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctcttcaatagtttgttcaactgtctctt 153  Q
    ||||||||||| ||   |||||| || ||||| ||||| | |||||||||||||||||| | |||||||||||| ||||  ||   |||||   |||||     
T  55335978 acacttcttcctaacatcaatgccattttcatttcaaatatctcaccattttctcttttttccaaatctttctcctcaagtgtgctttcaatactctctc 55336077  T
Q  154 ccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccatacc 205  Q
    | || | || ||||||||||||||||||||||||||| ||||||||||||||    
T  55336078 caaacatcttaaaaaatccaccacagtttctatacatttcaaacaccatacc 55336129  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 205
Target Start/End: Original strand, 55330516 - 55330697
Alignment:
Q  24 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 123  Q
    |||||||| |||||||||||||||||    ||| ||||||||||   ||| || || ||||| ||||| | ||| |||||||||||  | |  |||||||    
T  55330516 gattttgaagcaagctctctcatctcagaaacatttcttcccaacatcaaagccattttcatttcaaataactctccattttctctcatctcaaaatctt 55330615  T
Q  124 tctcttcaatagtttgttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccatacc 205  Q
    ||||||| |  ||||  ||||| ||||||||||| |||| ||  ||||||||||| ||||||||||| ||||| ||||||||    
T  55330616 tctcttccaatgtttcatcaacagtctcttccaacagcttaaggaatccaccacaatttctatacatttcaaataccatacc 55330697  T

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Target: scaffold1738 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1738
Description:

Target: scaffold1738; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 129 - 25
Alignment:
Q  24 gattttgaggcaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 123  Q
    |||||||| ||||| || |||| |||   ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  |||||||    
T  129 gattttgatgcaagttccctcagctctgatacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctt 30  T
Q  124 tctct 128  Q
    |||||    
T  29 tctct 25  T

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