View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9998_high_4 (Length: 462)
Name: NF9998_high_4
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9998_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 12 - 446
Target Start/End: Original strand, 14538464 - 14538892
Alignment:
| Q |
12 |
acagaccaaggtggctgtttgattgattttgtgcagaaatagcatttccgtcatctactttcgtcccccaaccattattagttgattaatgatatcagaa |
111 |
Q |
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| T |
14538464 |
acagaccaaggtggctgtttgattgattttgtgcagaaatagcatttccgtcatatactttcgtcccccaaccattattagttgattaatgatatcagaa |
14538563 |
T |
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| Q |
112 |
gtaatagttctggtaatctgttgtggaaatgaaagggatatatttcttggaatgcttttccagtttttagcatgcctttgtttgatgtctggttgaagga |
211 |
Q |
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| T |
14538564 |
gtaataattctggtaatctgttgtggaaatgaaagggatatatttcttggaatgcttttccagtttttagcatgcctttgtttgatgtctggttgaagga |
14538663 |
T |
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| Q |
212 |
taatgagtgaataagtaagcaaaacaacaatgtaataattagggccttggggtggtccaaccaccccattgtttaagaatttgggaggcattcaaatatt |
311 |
Q |
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| T |
14538664 |
taatg------taagtaagcaaaacaacaatgtaataattagggccttggggtggtccaaccaccccattgtttaagaatttggaaggcattcaaatatt |
14538757 |
T |
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| Q |
312 |
tataggttagaggcgaacgaaactggtaatttgatattaacatacagttaacataacaacgagaattatagttaatcagttgtccagttataccttgtct |
411 |
Q |
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| T |
14538758 |
tataggttagaggcgaacgaaactggtaatttgatattaacatacatttaacataacaacgagaattatagttaatcagttgtccagttacaccttgtct |
14538857 |
T |
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| Q |
412 |
tctagaggctcttccttgaaaagttctatctgatg |
446 |
Q |
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| T |
14538858 |
tctagaggctcttccttgaaaagttctatctgatg |
14538892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 14553955 - 14554125
Alignment:
| Q |
20 |
aggtggctgtttgattgattttgtgcagaaatagcatttccgtcatctactttcgtcccccaaccattattagttgattaatgatatcaga-agtaatag |
118 |
Q |
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| T |
14553955 |
aggtggttgtttgattgattttgtgcataaatagtattggcatcatctactatcattcccgaacccttattagtttataactgatctcacacagtcatac |
14554054 |
T |
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| Q |
119 |
ttctggtaatctgttgtggaaatgaaagggatatatttcttggaatgcttttccagtttttagcatgccttt |
190 |
Q |
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| T |
14554055 |
ttttggtaatgtgttgtgaaaatgaaagagatgtatttcttgggaggctttt-caggttttagcatgccttt |
14554125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 14526122 - 14526212
Alignment:
| Q |
144 |
aagggatatatttcttggaatgcttttccagtttttagcatgcctttgtttgatgtctggttgaaggataatgagtgaataagtaagcaaaa |
235 |
Q |
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| T |
14526122 |
aagggatatatttcttagaaggcttttccaggttttagcgtgccttt-tctgatgcttgattgtagggtaatgagtgaataagtaagcaaaa |
14526212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 14548602 - 14548667
Alignment:
| Q |
122 |
tggtaatctgttgtggaaatgaaagggatatatttcttggaatgcttttccagtttttagcatgcc |
187 |
Q |
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| T |
14548602 |
tggtaatgtcttgtgaaaatggaagggatgtatttcttggaaagctttttcaggtttcagcatgcc |
14548667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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