View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9998_high_6 (Length: 443)
Name: NF9998_high_6
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9998_high_6 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 30229758 - 30229329
Alignment:
| Q |
1 |
ggttgtaccaatgaaatagttcaaaatgaaagattgaactaacagagattatcacattatttcttaaaaatggtttagtttacttgctctaaaggagaaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30229758 |
ggttgtaccaatgaaatagttcaaaatgaaagattgaactaacagagattatcacattatttcttaaaaatggtttagtttacttgctctaaaggagaaa |
30229659 |
T |
|
| Q |
101 |
ctctgtgaataaacttttggcaatttacatgtacgagattgaatctttttcctaggaaagaaaatgaaagaaacaaccacaacgataaaattacctaatt |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30229658 |
ctgtgtgaataaacttttggcaatttacatgtacgagattgaatctttttcctagaaaagaaaatgaaagaaacaaccacaacgataaaattacctaatt |
30229559 |
T |
|
| Q |
201 |
tttgttccgcggttcctgatgaagtagacgcctcagtttcactagtgctatcagacttaagtcttttaattctgtttaaatttgtacaagaaagtgtagc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
30229558 |
tttgttccgcggttcctgatgaagtagacgcctcagtttcactggtgctatcagacttaagtcttttaattctgtttaaatttgtacaataaagtgtagc |
30229459 |
T |
|
| Q |
301 |
agagtgaaatttgatcagaaaacataaaacaataacaaaaaattcaaagaatacattacagtcttaggaaaaatcaacataaataagcnnnnnnnttagg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30229458 |
agagtgaaatttgatcagaaaacataaaacaataacaaaaaattcaaagaatacattacagtcttaggaaaaatcaacataaataagcaaaaaaattagg |
30229359 |
T |
|
| Q |
401 |
aaccctacacccatatttctcccacaggtt |
430 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |
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|
| T |
30229358 |
aaccctacacccatatttctcccataggtt |
30229329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 37 - 286
Target Start/End: Complemental strand, 30232447 - 30232188
Alignment:
| Q |
37 |
aactaacagagattatcacattatttcttaaaaatggtttagtttacttgctctaaaggagaaactctgtgaataaacttttggcaat-ttacatgt--a |
133 |
Q |
| |
|
||||||||||| || |||||| ||||||||||||| ||| ||||||||||||||||||||||||| ||| |||||| ||||||||| |||||||| | |
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|
| T |
30232447 |
aactaacagaggttttcacatcgtttcttaaaaatgttttggtttacttgctctaaaggagaaactgtgtaaataaatttttggcaaagttacatgtgta |
30232348 |
T |
|
| Q |
134 |
c-------gagattgaatctttttcctaggaaagaaaatgaaagaaacaaccacaacgataaaattacctaatttttgttccgcggttcctgatgaagta |
226 |
Q |
| |
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| | ||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30232347 |
cctgatgtgggattgaatcttgttcctagcaaagaaaatgaaagaaacaaccacaacaataaaattacctaatttttgttccgcggttcctgctgaagta |
30232248 |
T |
|
| Q |
227 |
gacgcctcagtttcactagtgctatcagacttaagtcttttaattctgtttaaatttgta |
286 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30232247 |
gacgccttagtttcactggtgctatcagacttaagtcttttaattctatttaaatttgta |
30232188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 37 - 360
Target Start/End: Original strand, 27077917 - 27078249
Alignment:
| Q |
37 |
aactaacagagattatcacattatttcttaaaaatggtttagttt----acttgctctaaaggagaaactctgtgaataaacttttggcaatttacatgt |
132 |
Q |
| |
|
|||||||||||||| |||||| |||| |||||||| ||| |||| |||||||||||||||||| || |||||||||| |||||||||||||||||| |
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|
| T |
27077917 |
aactaacagagattttcacatcgtttcctaaaaatgttttggtttgtttacttgctctaaaggagaa-ctgtgtgaataaatttttggcaatttacatgt |
27078015 |
T |
|
| Q |
133 |
ac-------gagattgaatctttttcctaggaaagaaaatgaaagaaacaaccacaacgataaaattacctaatttttgttccgcggttcctgatgaagt |
225 |
Q |
| |
|
|| | |||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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|
| T |
27078016 |
acctgatgcgggattgaatctcgttcctagcaaagaaaatgaaagaaacaaccacaacgataaagttacctaatttttgttccgcggttcctgctgaagt |
27078115 |
T |
|
| Q |
226 |
agacgcctcagtttcactagtgctatcagacttaagtcttttaattctgtttaaatttgtacaagaaagtgtagcagagtgaaatttgatcagaaaacat |
325 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||| ||||||| |
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|
| T |
27078116 |
agacgtctcagtttcactggtgctatcagacttaagtcttttaattctgttcaaatttgtacaataaagtgtagcagagtgaaattaaatcaaaaaacat |
27078215 |
T |
|
| Q |
326 |
aaaacaataacaaaaaattcaaagaatacattaca |
360 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||| |
|
|
| T |
27078216 |
gaaacaataa-aaaatattcaaagaatacattaca |
27078249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 60 - 325
Target Start/End: Complemental strand, 26987355 - 26987082
Alignment:
| Q |
60 |
tttcttaaaaatggtttagtttacttgctctaaaggagaaactctgtgaataaacttttggcaat-ttacatgtac-------gagattgaatctttttc |
151 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| ||||||||||| |||||||||| ||||||||| ||| |||||| | ||||||||||| ||| |
|
|
| T |
26987355 |
tttcttaaaaatgttttggtttacttgctcttaaggagaaactgtgtgaataaatttttggcaaagttatatgtacttgatgtgggattgaatcttgttc |
26987256 |
T |
|
| Q |
152 |
ctaggaaagaaaatgaaagaaacaaccacaacgataaaattacctaatttttgttccgcggttcctgatgaagtagacgcctcagtttcactagtgctat |
251 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| |
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|
| T |
26987255 |
ctagcaaagaaaatgaaagaaacaactacaacaataaaattacctaatttttgttccgcggttcctgctgaagtagacgccttagtttcactggtgctat |
26987156 |
T |
|
| Q |
252 |
cagacttaagtcttttaattctgtttaaatttgtacaagaaagtgtagcagagtgaaatttgatcagaaaacat |
325 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26987155 |
cagacttaagtcttttaattctatttaaatttgtacaataaagtgtagcagagtgaaatttgatcagaaaacat |
26987082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 188 - 325
Target Start/End: Complemental strand, 27026820 - 27026683
Alignment:
| Q |
188 |
aaattacctaatttttgttccgcggttcctgatgaagtagacgcctcagtttcactagtgctatcagacttaagtcttttaattctgtttaaatttgtac |
287 |
Q |
| |
|
||||||||| |||||||||||| ||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
27026820 |
aaattacctgatttttgttccgtggttccttctgaagtagacgcctcagttacactggtgctatcagacttaagtcttttaattctgcttaaatttgtac |
27026721 |
T |
|
| Q |
288 |
aagaaagtgtagcagagtgaaatttgatcagaaaacat |
325 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27026720 |
aataaagtgtagcagagtgaaatttgatcagaaaacat |
27026683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 243
Target Start/End: Original strand, 27100241 - 27100456
Alignment:
| Q |
37 |
aactaacagagattatcacattatttcttaaaaatggtttagtttacttgctctaaaggagaaac--tctgtgaataaacttttggcaatttacatgta- |
133 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||| ||| |||| ||||| ||||||||||||| | | |||||||| ||||| |||||||||| | |
|
|
| T |
27100241 |
aactaacagaaattatcacataatttcttaaaaatgttttggtttgcttgcgctaaaggagaaactgtatatgaataaaattttgaaaatttacatgcac |
27100340 |
T |
|
| Q |
134 |
------cgagattgaatctttttcctaggaaagaaaatgaaagaaacaaccacaacgat-aaaattacctaatttttgttccgcggttcctgatgaagta |
226 |
Q |
| |
|
|| |||| || ||| ||||||| ||||||||||||| || |||| | |||||| ||| |||||| |||||||||| |||||||| ||||||| |
|
|
| T |
27100341 |
atgtggcgggattaaaccttgttcctagcaaagaaaatgaaa-aagcaactaaaacgatcgaaagtacctagtttttgttccacggttccttctgaagta |
27100439 |
T |
|
| Q |
227 |
gacgcctcagtttcact |
243 |
Q |
| |
|
||||||| | ||||||| |
|
|
| T |
27100440 |
gacgccttattttcact |
27100456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 27026927 - 27026862
Alignment:
| Q |
37 |
aactaacagagattatcacattatttcttaaaaatggtttagtttacttgctctaaaggagaaact |
102 |
Q |
| |
|
|||||||| ||| |||||||| |||||| |||||||||| ||||||||||||||||| |||||| |
|
|
| T |
27026927 |
aactaacaaagagtatcacatcctttcttcaaaatggtttgctttacttgctctaaaggtgaaact |
27026862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 60 - 325
Target Start/End: Complemental strand, 34689462 - 34689197
Alignment:
| Q |
60 |
tttcttaaaaatggtttagtttacttgctctaaaggagaaactctgtgaataaacttttggcaat-ttacatgtac-------gagattgaatctttttc |
151 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| ||||||||||| |||||||||| ||||||||| ||| |||||| | ||| ||||||| ||| |
|
|
| T |
34689462 |
tttcttaaaaatgttttggtttacttgctcttaaggagaaactgtgtgaataaatttttggcaaagttagatgtacttgatgtgggatcgaatcttgttc |
34689363 |
T |
|
| Q |
152 |
ctaggaaagaaaatgaaagaaacaaccacaacgataaaattacctaatttttgttccgcggttcctgatgaagtagacgcctcagtttcactagtgctat |
251 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| |
|
|
| T |
34689362 |
ctagcaaagaaaatgaaagaaacaacaacaacaataaaattacctaatttttgttccgcggttcctgctgaagtagacgccttagtttcactggtgctat |
34689263 |
T |
|
| Q |
252 |
cagacttaagtcttttaattctgtttaaatttgtacaagaaagtgtagcagagtgaaatttgatcagaaaacat |
325 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34689262 |
cagacttaagtcttttaattctatttaaatttgt--------gtgtagcagagtgaaatttgatcagaaaacat |
34689197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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