View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9998_high_8 (Length: 405)

Name: NF9998_high_8
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9998_high_8
NF9998_high_8
[»] chr6 (14 HSPs)
chr6 (10-392)||(5253746-5254119)
chr6 (1-296)||(5065245-5065540)
chr6 (18-277)||(5177960-5178210)
chr6 (13-258)||(5126460-5126708)
chr6 (205-294)||(5126352-5126441)
chr6 (18-94)||(5279785-5279861)
chr6 (18-94)||(5688901-5688977)
chr6 (10-94)||(5346242-5346326)
chr6 (226-277)||(5688716-5688767)
chr6 (12-94)||(5072680-5072762)
chr6 (226-276)||(5279990-5280040)
chr6 (10-92)||(5398259-5398341)
chr6 (10-94)||(5242510-5242594)
chr6 (218-266)||(5279907-5279955)


Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 10 - 392
Target Start/End: Original strand, 5253746 - 5254119
Alignment:
Q  10 aacctggaaacaaagtggaggttgtagctgtttttgagaacgactttattgtggagaggacaacagtttatctcatatatgatgagccgattgctgaaaa 109  Q
    |||||||||| ||||||||| |||| | |||||||||||||   || |||||| ||||||| |||||||||||||||||||| ||||| |||||||||||    
T  5253746 aacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagtttatctcatatatgacgagcccattgctgaaaa 5253845  T
Q  110 ggcggaggagtgtcatggacaagataagaatgttattgttagtagaggtgatgaaaatgaatgttttgttagaagtgtctcttctaatgtacaatataag 209  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5253846 ggcggaggagtgtcatggacaagatatgaatgttattgttagtagtggttatgaaaatgaatgttttgttagaagtgtctcttctaatgcacaatataag 5253945  T
Q  210 aatcaagcaattgtttgtagtgatgaagaaaatgaatgctttgtcagaaaagtctctcctcaagtggcgcccatggatgacttaacagataatagaagga 309  Q
    |||||| ||||||||||||||||||||||||||||||||||          ||||||||| ||||||||||| ||||||||||||||||||| |||||||    
T  5253946 aatcaaccaattgtttgtagtgatgaagaaaatgaatgctt---------ggtctctcctaaagtggcgcccttggatgacttaacagataacagaagga 5254036  T
Q  310 cggacattctcagaaggcttctgaaggattgggttgtggggtaagtaaagatgacatccaccgaatctcctaatgaagtttgt 392  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||  |||||| |||||||||||||    
T  5254037 cggacattctcagaaggcttctgaaggattgggtcgtggggtaagtcaagatgacatccacgtaatctcttaatgaagtttgt 5254119  T

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Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 5065540 - 5065245
Alignment:
Q  1 caagcattcaacctggaaacaaagtggaggttgtagctgtttttgagaacgactttattgtggagaggacaacagtttatctcatatatgatgagccgat 100  Q
    |||| ||| |||||||||| ||||||||  |||| | ||||||||||||||  ||  ||||| ||||||||||||||||||||||||||||||| || ||    
T  5065540 caagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaacagtttatctcatatatgatgaaccaat 5065441  T
Q  101 tgctgaaaaggcggaggagtgtcatggacaagataagaatgttattgttagtagaggtgatgaaaatgaatgttttgttagaagtg-tctcttctaatgt 199  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||  |||  | | |||||||| |||     
T  5065440 tgctgaaaagggggaggagtgtcatgcacaagataagaatgttattgttagtagcggtgatgaaaatgaatgcttt-ctaggcgagatctcttctcatgc 5065342  T
Q  200 acaatataagaatcaagcaattgtttgtagtgatgaagaaaatgaatgctttgtcagaaaagtctctcctcaagtggcgcccatggatgacttaaca 296  Q
    |||| |||||||  || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||  ||||||||||||||    
T  5065341 acaacataagaacgaatcaattgtttgtagtggtgaagaaaatgaatgctttgtcagaaaagtctctcctcaagtggttcctgtggatgacttaaca 5065245  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 5177960 - 5178210
Alignment:
Q  18 aacaaagtggaggttgtagctgtttttgagaacgactttattgtggagaggacaacagtttatctcatatatgatgagccgattgctgaaaaggcggagg 117  Q
    ||||||||||||||||| | ||||||||||||||  || |||||| |||  ||||||||||||||| |||||||||| || ||||  |||||   ||||     
T  5177960 aacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaattggagaaaaaatggagc 5178059  T
Q  118 agtgtcatggacaagataagaatgttattgttagtagaggtgatgaaaatgaatgttttgttagaagtgtctcttctaatgtacaatataagaatcaagc 217  Q
    | || || | |||||  |||||    |||||  |||| ||||||||| ||||||| ||||| |||   ||||||||||||| |||| || | |||   |     
T  5178060 aatgccaagaacaag--aagaa----attgtgtgtagtggtgatgaagatgaatgctttgtcagagaagtctcttctaatgcacaagattacaat---gt 5178150  T
Q  218 aattgtttgtagtgatgaagaaaatgaatgctttgtcagaaaagtctctcctcaagtggc 277  Q
     |||||| |||||| ||| |||||||||||  |||||||||| |||||||||||||||||    
T  5178151 cattgttagtagtggtgatgaaaatgaatgtgttgtcagaaatgtctctcctcaagtggc 5178210  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 5126708 - 5126460
Alignment:
Q  13 ctggaaacaaagtggaggttgtagctgtttttgagaacgactttattgtggagaggacaacagtttatctcatatatgatgagccgattgctgaaaaggc 112  Q
    |||| |||||||| ||| |||| | ||||||| ||||||  || |||||| ||| |||| | |||||||||||||||||||| || |||| |||||        
T  5126708 ctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtttatctcatatatgatgaaccaattggtgaaactat 5126609  T
Q  113 ggaggagtgtcatggaca---agataagaatgttattgttagtagaggtgatgaaaatgaatgttttgttagaagtgtctcttctaatgtacaatataag 209  Q
    | || | ||||||| ||    | |||||||||||| |||| |||| |||||| ||| |||| | ||||  |||   ||||||||| ||| | || | |||    
T  5126608 gaagcaatgtcatgcacggacatataagaatgttaatgtttgtagtggtgataaaactgaaagctttgaaagagaggtctcttctcatgcagaagaaaag 5126509  T
Q  210 aatcaagcaattgtttgtagtgatgaagaaaatgaatgctttgtcagaa 258  Q
    |||||| | |||||| |||||||||||||||||||| ||||||||||||    
T  5126508 aatcaacctattgttagtagtgatgaagaaaatgaaggctttgtcagaa 5126460  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 205 - 294
Target Start/End: Complemental strand, 5126441 - 5126352
Alignment:
Q  205 ataagaatcaagcaattgtttgtagtgatgaagaaaatgaatgctttgtcagaaaagtctctcctcaagtggcgcccatggatgacttaa 294  Q
    |||||||| || ||||||||||||||| ||||||||| ||| |||||||||| || || |||||||||||||| ||||| ||||| ||||    
T  5126441 ataagaatgaaccaattgtttgtagtgctgaagaaaaggaaggctttgtcaggaaggtatctcctcaagtggctcccattgatgatttaa 5126352  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 5279785 - 5279861
Alignment:
Q  18 aacaaagtggaggttgtagctgtttttgagaacgactttattgtggagaggacaacagtttatctcatatatgatga 94  Q
    ||||||||||||||||| | ||||||||||||||  || |||||| |||  ||||||||||||||| ||||||||||    
T  5279785 aacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatga 5279861  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 5688977 - 5688901
Alignment:
Q  18 aacaaagtggaggttgtagctgtttttgagaacgactttattgtggagaggacaacagtttatctcatatatgatga 94  Q
    |||||||||||||||||  |||||||||||||||  || |||||| |||  ||||||||||||||| ||||||||||    
T  5688977 aacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatga 5688901  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 5346242 - 5346326
Alignment:
Q  10 aacctggaaacaaagtggaggttgtagctgtttttgagaacgactttattgtggagaggacaacagtttatctcatatatgatga 94  Q
    ||||||| ||||||||||||||||| | |||| ||||||| |  || |||||| ||| |||| || |||||||||||||||||||    
T  5346242 aacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaatttatctcatatatgatga 5346326  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 5688767 - 5688716
Alignment:
Q  226 gtagtgatgaagaaaatgaatgctttgtcagaaaagtctctcctcaagtggc 277  Q
    |||||| ||| |||||||||||  |||||||||| |||||||||||||||||    
T  5688767 gtagtggtgatgaaaatgaatgtgttgtcagaaatgtctctcctcaagtggc 5688716  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 5072762 - 5072680
Alignment:
Q  12 cctggaaacaaagtggaggttgtagctgtttttgagaacgactttattgtggagaggacaacagtttatctcatatatgatga 94  Q
    ||||| ||| ||||||||||||| | |||| |||||||||| || |||||| | | ||||| | ||||||||||||| |||||    
T  5072762 cctggtaaccaagtggaggttgtcgttgttgttgagaacgatttcattgtgaaaaagacaataatttatctcatatacgatga 5072680  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 5279990 - 5280040
Alignment:
Q  226 gtagtgatgaagaaaatgaatgctttgtcagaaaagtctctcctcaagtgg 276  Q
    |||||| ||| |||||||||||  |||||||||| ||||||||||||||||    
T  5279990 gtagtggtgatgaaaatgaatgtgttgtcagaaatgtctctcctcaagtgg 5280040  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 5398259 - 5398341
Alignment:
Q  10 aacctggaaacaaagtggaggttgtagctgtttttgagaacgactttattgtggagaggacaacagtttatctcatatatgat 92  Q
    ||||||| |||||||| ||||||||   |||||| ||||| || || |||||| ||| |||||||||||||||  ||||||||    
T  5398259 aacctggtaacaaagttgaggttgtctttgttttcgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 5398341  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 5242594 - 5242510
Alignment:
Q  10 aacctggaaacaaagtggaggttgtagctgtttttgagaacgactttattgtggagaggacaacagtttatctcatatatgatga 94  Q
    ||||||| |||||||||||||| ||   |||||||||||||   || |||||| ||| ||||  |||||||||| ||||||||||    
T  5242594 aacctggtaacaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatctcgtatatgatga 5242510  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 5279907 - 5279955
Alignment:
Q  218 aattgtttgtagtgatgaagaaaatgaatgctttgtcagaaaagtctct 266  Q
    |||||| ||||||| ||| ||| ||||||||||||||||| ||||||||    
T  5279907 aattgtgtgtagtggtgatgaagatgaatgctttgtcagagaagtctct 5279955  T

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