View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9998_low_1 (Length: 590)
Name: NF9998_low_1
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9998_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 16 - 580
Target Start/End: Complemental strand, 18209706 - 18209143
Alignment:
| Q |
16 |
taaacaactctagtgtctttaggctcaactttgacacgaacagccctgttaggttttgtaaccgatgcctgaccagcttcaccatgttcaacagccacag |
115 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
18209706 |
taaacaactctagtgtctttaggctcaatcttgacacgaacatccctgttaggttttgtaaccgatgcctgaccagcttcaccgtgatcaacagccacag |
18209607 |
T |
|
| Q |
116 |
agtcaatgctatcagaggaccgcttaagacttgtcttgctggttggtgtgccaatcacacaggtattgctgcaagagtcttgagcctcatgtaaatcctg |
215 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||| |||||| |
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| T |
18209606 |
agtcaatgctatcagaggaccgcttaagacctgtcttgctggttggtgtgccaatcacacaggtattgctgcatgagtcttcagcctcttgtacatcctg |
18209507 |
T |
|
| Q |
216 |
cagacatttgtgtaaaacaaaattgtttaaatttcatacagattaaattttctacattttattagcaattcttgatttatatataattaatcaatgaagt |
315 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||| ||||||||||||||||| ||||| ||| |||||| | |||| |||||||||||||||||||||| |
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| T |
18209506 |
cagacatttgtgttaaaaaaatttgtttaaatttcctacagattaaattttctgcatttgattggcaattgtagatt-atatataattaatcaatgaagt |
18209408 |
T |
|
| Q |
316 |
gccacctcaacattataattgtttgttgcaacaccattcagactaagctcttcaacagatccatcgttgggtttctatcacacatacatcaacaaaagat |
415 |
Q |
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||||||| ||||||||||||||| | |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18209407 |
gccacctgaacattataattgttggctgcaacaccattcacactaagttcttcaacagatccatcgttgggtttctatcacacatacatcaacaaaagaa |
18209308 |
T |
|
| Q |
416 |
ccaattagtcatagaatgatttcgttatgtacattaattattctaaaatagttttgagattgtaatatcagatatgaactacctccaaattatacttaga |
515 |
Q |
| |
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|||||||||||||| |||||||| ||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18209307 |
ccaattagtcataggatgatttccttatgaacattaattaatctaaaatagttatgagattgtaatatcagatatgaactacctccaaattatacttaga |
18209208 |
T |
|
| Q |
516 |
tatgaattgttcgatgacaccaacatcgtcagatgccttcttaacgatataattcctatgcttct |
580 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
18209207 |
catgaactgttcgatgacaccaacatcgtcagatgccttcttaacggcataattcctatacttct |
18209143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 16 - 580
Target Start/End: Original strand, 37899075 - 37899638
Alignment:
| Q |
16 |
taaacaactctagtgtctttaggctcaactttgacacgaacagccctgttaggttttgtaaccgatgcctgaccagcttcaccatgttcaacagccacag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
37899075 |
taaacaactctagtgtctttaggctcaatcttgacacgaacagccctgttaggttttgtaaccgatgcctgaccagcttcaccgtgatcaacagccacag |
37899174 |
T |
|
| Q |
116 |
agtcaatgctatcagaggaccgcttaagacttgtcttgctggttggtgtgccaatcacacaggtattgctgcaagagtcttgagcctcatgtaaatcctg |
215 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| | |||| |||| |||||| |
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| T |
37899175 |
agtcaatgctatcagaggaccgcttaagacctgtcttgctggttggtgtgccaatcacacaggtattgctgcatgagtcttcaacctcttgtacatcctg |
37899274 |
T |
|
| Q |
216 |
cagacatttgtgtaaaacaaaattgtttaaatttcatacagattaaattttctacattttattagcaattcttgatttatatataattaatcaatgaagt |
315 |
Q |
| |
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||||||||||||| ||| ||| | ||||||||||| ||||||||||||||||| ||||| ||| |||||| | |||| ||| |||| ||||||||||||| |
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|
| T |
37899275 |
cagacatttgtgttaaaaaaattggtttaaatttcctacagattaaattttctgcatttgattggcaattgtagatt-atacataaataatcaatgaagt |
37899373 |
T |
|
| Q |
316 |
gccacctcaacattataattgtttgttgcaacaccattcagactaagctcttcaacagatccatcgttgggtttctatcacacatacatcaacaaaagat |
415 |
Q |
| |
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||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37899374 |
gccacctgaacattataattgtttgctgcaacaccattcacactaagctcttcaacagatccatcgttgggtttctatcacacatacatcaacaaaagaa |
37899473 |
T |
|
| Q |
416 |
ccaattagtcatagaatgatttcgttatgtacattaattattctaaaatagttttgagattgtaatatcagatatgaactacctccaaattatacttaga |
515 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37899474 |
ccaattagtcataggatgatttccttatgaacattaattaatctaaaacagttatgagattgtaatatcagatatgaactacctccaaattatacttaga |
37899573 |
T |
|
| Q |
516 |
tatgaattgttcgatgacaccaacatcgtcagatgccttcttaacgatataattcctatgcttct |
580 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
37899574 |
catgaactgttcgatgacaccaacatcgtcagatgccttcttaacggcataattcctatacttct |
37899638 |
T |
|
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