View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9998_low_10 (Length: 433)
Name: NF9998_low_10
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9998_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 188 - 416
Target Start/End: Original strand, 43766543 - 43766772
Alignment:
| Q |
188 |
ttgaattatcatatccttgaaccacatgaatgaaaaatttgcatgcacatnnnnnnnnnnnnnnnnnnnnnctatatccttttgcttt--agaagtttaa |
285 |
Q |
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| T |
43766543 |
ttgaattatcatatccttgaaccacatgaatgaaaaatttgcatgcacataaaaaaaaacaaaataaata-ctatatccttttgctttgtagaagtttaa |
43766641 |
T |
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| Q |
286 |
caatgtttacttattgtgctatgtttgcagaatcaatggaaggaaatgtttccatgtttaatatctaaggcagcaacagttgacactatatgcaaaggag |
385 |
Q |
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| T |
43766642 |
caatgtttacttattgtgctatgtttgcagaatcaatggaaggaaatgtttccatgtttaatatctaaggcagcaacagttgacactatatgcaaaggag |
43766741 |
T |
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| Q |
386 |
aaggttctaacaagaatggtgcagtgcaact |
416 |
Q |
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| T |
43766742 |
aaggttctaacaagaatggtgcagtgcaact |
43766772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 43766060 - 43766234
Alignment:
| Q |
14 |
agagaccggccgcgaaatacttaactacgatgaatatatgaaggagtttgcagttgaaaattcagacaatggtagaccaaagagatccattgaagcttca |
113 |
Q |
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| T |
43766060 |
agagaccggtcgcgaaatacttaactatgatgaatatatgaaggagtttgcagatgaaaattcagaccatggaagaccaaagagatccattgaagcttca |
43766159 |
T |
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| Q |
114 |
agagatacaggagttgtttttgcagatcttcctcggattgtccaatgttttcttgatgctgtaagacacaagctt |
188 |
Q |
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| T |
43766160 |
agagatacaggagttgtttttgcagatcttcctcggattgtccaatgctttcttgatgctgtaagacacaagctt |
43766234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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