View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9998_low_11 (Length: 426)
Name: NF9998_low_11
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9998_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 17 - 419
Target Start/End: Complemental strand, 21989759 - 21989356
Alignment:
| Q |
17 |
ataattcacataatgttttactaaaatgatataaataaatgacagnnnnnnnnatcaactaactcacggctttaaattttttgttagccctcataaattg |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21989759 |
ataattcacataattttttactaaaatgat-taaataaatgacagttttttttatcaactgactcacggctttaaattttttgttagccctcgtaaattg |
21989661 |
T |
|
| Q |
117 |
cattgttatatat-at-tatcctcgcacaccttgtgtttgaattagtagtgtttcnnnnnnnntaatt-ggcttccnnnnnnntacggtagggaaaaggt |
213 |
Q |
| |
|
|||||||||| | || |||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||| |||||||| |
|
|
| T |
21989660 |
tattgttatatttgatctatcctcgcacaccttgtgtttgaattagtagtgtttcaaaaaaaaaaatttggcttccaaaaaaatacggtagagaaaaggt |
21989561 |
T |
|
| Q |
214 |
gttaatannnnnnnnnnnnnnnnncaaaaacttaaatgatacttgttcattcaagtttatggagtacattaaatacaatcatatattcaattgctgaaaa |
313 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
21989560 |
gttaatatttttattttatttttttcaaaacttaaatgatatttgttcattcaagtttatggagtacattaaatacaatcacatattcaattgttgaaaa |
21989461 |
T |
|
| Q |
314 |
cataaatgacgaatctgtcagtaaactcacaacatccacctcaatagtatacaagagtaaattgtctatcaataatacgatcaaatcaaagttattggaa |
413 |
Q |
| |
|
|||||| || |||||||||| |||| |||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21989460 |
cataaaggatgaatctgtcaataaaatcacaacatcca-ttcaatagtatacaacagtaaattgtctatcaataatacaatcaaatcaaagttattggaa |
21989362 |
T |
|
| Q |
414 |
caccaa |
419 |
Q |
| |
|
|||||| |
|
|
| T |
21989361 |
caccaa |
21989356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University