View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9998_low_13 (Length: 423)
Name: NF9998_low_13
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9998_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 10663503 - 10663730
Alignment:
| Q |
1 |
taatgaagtaatggagtctaagtcaatatccatcttcatttggccaaatccgcattatgtttattgttaaactaaaaatagtttattcaccatacttctg |
100 |
Q |
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| T |
10663503 |
taatgaagtaatggagtctaagtcaatatccatcttcatttggccaaaaccgcattatgtttattgttaaactaaaaatagtttattcaccatacttctg |
10663602 |
T |
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| Q |
101 |
acatgcatgagtatccaaattactcagaatattaattaagtcattatcataagtggttagatgttcattattaagtccaatattttcatttgaacaattc |
200 |
Q |
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| T |
10663603 |
acatgcatgagtatccaaattactcagaatattaattaagtcattatcataagtggttagatgttcattattaagtccaataatttcatttgaacaattc |
10663702 |
T |
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| Q |
201 |
ataattaagatataagtccactctttct |
228 |
Q |
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| T |
10663703 |
ataattaagatataagtccactctttct |
10663730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 411
Target Start/End: Original strand, 10663925 - 10663994
Alignment:
| Q |
342 |
ctattagcatgcctaaatgccttaacttgtgtgtatgtccacnnnnnnnaaaattaggttctcacaggtt |
411 |
Q |
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| T |
10663925 |
ctattagcatgcctaaatgccttaacttgtgtgtatgtccactttttctaaaattaggctctcacaggtt |
10663994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 276
Target Start/End: Original strand, 10663718 - 10663757
Alignment:
| Q |
237 |
gtccactctttctaatcatcttcttgtatatgccaaaagg |
276 |
Q |
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| T |
10663718 |
gtccactctttctaatcatcttcttgtaaatgccaaaagg |
10663757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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