View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9998_low_17 (Length: 367)

Name: NF9998_low_17
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9998_low_17
NF9998_low_17
[»] chr3 (2 HSPs)
chr3 (21-355)||(7903278-7903606)
chr3 (134-215)||(35740232-35740312)
[»] chr7 (5 HSPs)
chr7 (128-273)||(16994393-16994537)
chr7 (304-354)||(10623444-10623494)
chr7 (315-355)||(16994588-16994628)
chr7 (146-261)||(28002574-28002688)
chr7 (304-352)||(24957660-24957708)
[»] chr1 (3 HSPs)
chr1 (134-216)||(52148737-52148819)
chr1 (82-233)||(48563123-48563273)
chr1 (317-355)||(48563366-48563404)
[»] chr4 (3 HSPs)
chr4 (134-259)||(35260242-35260366)
chr4 (304-352)||(18402790-18402838)
chr4 (159-262)||(38011662-38011765)
[»] chr8 (1 HSPs)
chr8 (134-261)||(41566102-41566228)
[»] chr6 (1 HSPs)
chr6 (304-354)||(3008748-3008798)
[»] chr2 (3 HSPs)
chr2 (209-286)||(12419515-12419592)
chr2 (209-286)||(12431575-12431652)
chr2 (173-261)||(39228857-39228945)


Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 21 - 355
Target Start/End: Original strand, 7903278 - 7903606
Alignment:
Q  21 gtggtttgtgtttgtttgggtcattggtggtgtttgtctgtaaccggatgtttgtcacccgcgtctagtatgtttttcgtttatcttcctgatgtttgtg 120  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||    
T  7903278 gtggtttgtgtttgtttgggtcattggcggtgtttgtctgtaaccggatgtttgtcacccgcgtctagtatgtttttcgtttatgttcctaatgttcgtg 7903377  T
Q  121 atataacattggatggttgaagacttttggcctctttatgatgtggtttggtttcaaaaacttgaaaatgtatggttctgttaacccaaaagggtttgat 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  7903378 atataacattggatggttgaagacttttggcctctttatgatgtggtttggtttcaaaaacttgaaaagatatggttctgttaacccgaaagggtttgat 7903477  T
Q  221 tactaacttattgtggtcattcctcgatttgagttcttacgtatatatttgaaacctattgcgtttccgactcactggtgtacatgtttcccgatttgtt 320  Q
    ||||||| ||||| ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||      ||||||||||| ||||    
T  7903478 tactaacgtattggggtcattcctcgatttgagttcttacgcatatgtttgaaacctattgtgtttccgactcactgg------tgtttcccgatctgtt 7903571  T
Q  321 gagatctgcaagtttcaagtcgtcttgtctgccta 355  Q
    |||||||||||||||||||||||||||||||||||    
T  7903572 gagatctgcaagtttcaagtcgtcttgtctgccta 7903606  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 215
Target Start/End: Complemental strand, 35740312 - 35740232
Alignment:
Q  134 tggttgaagacttttggcctctttatgatgtggtttggtttcaaaaacttgaaaatgtatggttctgttaacccaaaagggt 215  Q
    |||||||||||||| |||||  || ||||||| |||||||||||||||  ||||  | |||||||||||| ||| |||||||    
T  35740312 tggttgaagacttt-ggccttgttttgatgtgatttggtttcaaaaacccgaaagggaatggttctgttagcccgaaagggt 35740232  T

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Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 128 - 273
Target Start/End: Original strand, 16994393 - 16994537
Alignment:
Q  128 attggatggttgaagacttttggcctctttatgatgtggtttggtttcaaaaacttgaaaatgtatggttctgttaacccaaaagggtttgattactaac 227  Q
    ||||| |||||||||||||||||||||||| |||||||| | |||||| |||||||||||  ||||| || ||||||||| ||||||| |||||||||      
T  16994393 attgggtggttgaagacttttggcctctttttgatgtgg-taggtttctaaaacttgaaagggtatgattttgttaacccgaaagggtctgattactagt 16994491  T
Q  228 ttattgtggtcattcctcgatttgagttcttacgtatatatttgaa 273  Q
    ||||||   || | ||| ||| ||||||||||||| ||| ||||||    
T  16994492 ttattggactcgtcccttgatctgagttcttacgtgtatgtttgaa 16994537  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 304 - 354
Target Start/End: Original strand, 10623444 - 10623494
Alignment:
Q  304 atgtttcccgatttgttgagatctgcaagtttcaagtcgtcttgtctgcct 354  Q
    |||||||| |||||||||||||||||| ||||||||| |||||||||||||    
T  10623444 atgtttccagatttgttgagatctgcaggtttcaagttgtcttgtctgcct 10623494  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 355
Target Start/End: Original strand, 16994588 - 16994628
Alignment:
Q  315 tttgttgagatctgcaagtttcaagtcgtcttgtctgccta 355  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  16994588 tttgttgagatctgcagatttcaagtcgtcttgtctgccta 16994628  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 261
Target Start/End: Original strand, 28002574 - 28002688
Alignment:
Q  146 tttggcctctttatgatgtggtttggtttcaaaaacttgaaaatgtatggttctgttaacccaaaagggtttgattactaacttattgtggtcattcctc 245  Q
    |||||||||||| |||||||| |||||||||||||| |||||  |||||  |||| ||| |  ||||||| || ||| |||| |||||   |||| ||||    
T  28002574 tttggcctcttt-tgatgtggattggtttcaaaaacctgaaagggtatgactctgctaatctgaaagggtctggttattaacgtattgaactcatccctc 28002672  T
Q  246 gatttgagttcttacg 261  Q
    ||| ||||||||||||    
T  28002673 gatctgagttcttacg 28002688  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 24957708 - 24957660
Alignment:
Q  304 atgtttcccgatttgttgagatctgcaagtttcaagtcgtcttgtctgc 352  Q
    ||||||||  || ||||||||| |||||||||||||| |||||||||||    
T  24957708 atgtttccaaatctgttgagatttgcaagtttcaagtagtcttgtctgc 24957660  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 134 - 216
Target Start/End: Original strand, 52148737 - 52148819
Alignment:
Q  134 tggttgaagacttttggcctctttatgatgtggtttggtttcaaaaacttgaaaatgtatggttctgttaacccaaaagggtt 216  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||| | |||  |||||||| ||||||||| ||||||||    
T  52148737 tggttgaagacttttggcctctttttgatgtggtttgatttcaaaaacctaaaagggtatggttatgttaacccgaaagggtt 52148819  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 233
Target Start/End: Original strand, 48563123 - 48563273
Alignment:
Q  82 cgtctagtatgtttttcgtttatcttcctgatgtttgtgatataacattggatggttgaagacttttggcctctttatgatgtggtttggtttcaaaaac 181  Q
    ||||| ||||||||||| ||| | ||| || ||||||||||   | | ||| |||| |||||||||||||||  || |||||||||||||||| | ||||    
T  48563123 cgtctggtatgtttttcctttttgttcgtgttgtttgtgatcagagactgggtggtcgaagacttttggcctagtt-tgatgtggtttggttttataaac 48563221  T
Q  182 ttgaaaatgtatggttctgttaacccaaaagggtttgattactaacttattg 233  Q
     |||||  |||||||||| ||||||  ||||||| || |||||||| |||||    
T  48563222 ctgaaagggtatggttctattaacctgaaagggtctggttactaacatattg 48563273  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 48563366 - 48563404
Alignment:
Q  317 tgttgagatctgcaagtttcaagtcgtcttgtctgccta 355  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  48563366 tgttgagatctgcaggtttcaagtcgtcttgtatgccta 48563404  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 259
Target Start/End: Complemental strand, 35260366 - 35260242
Alignment:
Q  134 tggttgaagacttttggcctctttatgatgtggtttggtttcaaaaacttgaaaatgtatggttctgttaacccaaaagggtttgattactaacttattg 233  Q
    |||||||||| |||||||||| || ||||||||||||||||| ||| || |||   |||||||||||||||||  ||||||||||| ||||||| |||||    
T  35260366 tggttgaagaattttggcctcgttttgatgtggtttggtttctaaacct-gaaggggtatggttctgttaacctgaaagggtttgaatactaacatattg 35260268  T
Q  234 tggtcattcctcgatttgagttctta 259  Q
       |||| | ||||||||||||||||    
T  35260267 gattcatccatcgatttgagttctta 35260242  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 18402838 - 18402790
Alignment:
Q  304 atgtttcccgatttgttgagatctgcaagtttcaagtcgtcttgtctgc 352  Q
    |||||||| ||||||||||||||||||  ||||||||||||||||||||    
T  18402838 atgtttccagatttgttgagatctgcagatttcaagtcgtcttgtctgc 18402790  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 262
Target Start/End: Complemental strand, 38011765 - 38011662
Alignment:
Q  159 tgatgtggtttggtttcaaaaacttgaaaatgtatggttctgttaacccaaaagggtttgattactaacttattgtggtcattcctcgatttgagttctt 258  Q
    ||||||||||||||||| |||||| | ||  ||||||||||| ||||||  |||||| || |||||||| |||||   |||| ||||||| ||| |||||    
T  38011765 tgatgtggtttggtttctaaaactcgtaagggtatggttctgataacccgcaagggtctggttactaacgtattggactcatccctcgatctgaattctt 38011666  T
Q  259 acgt 262  Q
    ||||    
T  38011665 acgt 38011662  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 261
Target Start/End: Original strand, 41566102 - 41566228
Alignment:
Q  134 tggttgaagacttttggcctctttatgatgtggtttggtttcaaaaacttgaaaatgtatggttctgttaacccaaaagggtttgattactaacttattg 233  Q
    |||| ||||||||||||||| ||| |||||||||||| ||| | ||||  ||||  ||||||||||||||||||| |||||| || |||||||| ||||     
T  41566102 tggtcgaagacttttggcctattt-tgatgtggtttgcttttataaacccgaaagggtatggttctgttaacccataagggtctggttactaacgtatta 41566200  T
Q  234 tggtcattcctcgatttgagttcttacg 261  Q
       |||| || |||| ||||||||||||    
T  41566201 gactcatcccacgatctgagttcttacg 41566228  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 354
Target Start/End: Complemental strand, 3008798 - 3008748
Alignment:
Q  304 atgtttcccgatttgttgagatctgcaagtttcaagtcgtcttgtctgcct 354  Q
    |||||||| |||||||||||||||| | |||||||||||| ||||||||||    
T  3008798 atgtttccagatttgttgagatctgtaggtttcaagtcgtattgtctgcct 3008748  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 286
Target Start/End: Complemental strand, 12419592 - 12419515
Alignment:
Q  209 aaagggtttgattactaacttattgtggtcattcctcgatttgagttcttacgtatatatttgaaacctattgcgttt 286  Q
    |||||||||| |||||||| |||||   |||| ||| ||| ||||||||||||  ||| |||||||||||||| ||||    
T  12419592 aaagggtttggttactaacgtattggactcatccctagatctgagttcttacgcgtatgtttgaaacctattgtgttt 12419515  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 286
Target Start/End: Complemental strand, 12431652 - 12431575
Alignment:
Q  209 aaagggtttgattactaacttattgtggtcattcctcgatttgagttcttacgtatatatttgaaacctattgcgttt 286  Q
    |||||||||| |||||||| |||||   |||| ||| ||| ||||||||||||  ||| |||||||||||||| ||||    
T  12431652 aaagggtttggttactaacgtattggactcatccctagatctgagttcttacgcgtatgtttgaaacctattgtgttt 12431575  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 261
Target Start/End: Original strand, 39228857 - 39228945
Alignment:
Q  173 ttcaaaaacttgaaaatgtatggttctgttaacccaaaagggtttgattactaacttattgtggtcattcctcgatttgagttcttacg 261  Q
    ||||||||| |||||   ||||||||||||||||| ||||| | || |||||||| ||||    |||| ||||||| ||||||||||||    
T  39228857 ttcaaaaacctgaaaggctatggttctgttaacccgaaaggttctggttactaacgtattcgactcatccctcgatctgagttcttacg 39228945  T

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