View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9998_low_18 (Length: 363)
Name: NF9998_low_18
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9998_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 9 - 344
Target Start/End: Original strand, 34428214 - 34428549
Alignment:
| Q |
9 |
tatattcaagaatctgtagaagctaaggaagctcttcttgctcaagaaactgatgaaagtgaggtaattgatgtaaaatttgtgatggttaatagtcttg |
108 |
Q |
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| T |
34428214 |
tatattcaagaatatgtaaaagctaaggaagctcttcttgtccaagcaactgatgaaagtgaggtaattgatgtaaaatttgtgatggttaatagtcttg |
34428313 |
T |
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| Q |
109 |
agatatatctatatagcaagagaagctgaagctagaagaaaacaatatttgatttacagcaaaggagaacaatatttgattcatctattcccacttaatg |
208 |
Q |
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| T |
34428314 |
agatatatctatatagcaagagaagctgaagctagaagaaaacaatatttgatttacagcaaaggagaacaatatttgattcatctattcccacttaatg |
34428413 |
T |
|
| Q |
209 |
gcttaattgcattgcttaacctttggcgaggaaagaaaaggagaacatattacaacgagttgaaaacattagaacataaaagcaaagtagccaaagaatt |
308 |
Q |
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| T |
34428414 |
gcttaattgcattgcttaacctttggcgaggaaagaaaaggagaacatattacaacgagttgaaaacattagaacataaaagcaaagtagccaaagaatt |
34428513 |
T |
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| Q |
309 |
tagtatttatgaagctaaagaaacgaccttttatac |
344 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
34428514 |
tagtatttatgaagctaaagaaacgaccttttatac |
34428549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 32283601 - 32283501
Alignment:
| Q |
11 |
tattcaagaatctgtagaagctaaggaagctcttcttgctcaagaaactgatgaaagtgaggtaattgatgtaaaatttgtgatggttaatagtcttgag |
110 |
Q |
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||||||||||||||| ||||||||||||||||||||||| | || ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
32283601 |
tattcaagaatctgttgaagctaaggaagctcttcttgcccgagcaactgatgaaaatgaggtaattgatgtaaaatttgcaatggttaatagtctggag |
32283502 |
T |
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| Q |
111 |
a |
111 |
Q |
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| T |
32283501 |
a |
32283501 |
T |
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