View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9998_low_19 (Length: 348)
Name: NF9998_low_19
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9998_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 40043492 - 40043172
Alignment:
| Q |
1 |
caaatgataccatttatatatgcaatcgcaaacctaattattcggttatctatgtgtttaatgatttctatagttgacgaatttgtgatttgatttcaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40043492 |
caaatgataccatttatatatgcaatcgcaaacctaattattcggttatctatgtgtttaatgatttctatagttgacgaatttgtgatttgattttaag |
40043393 |
T |
|
| Q |
101 |
aaacaaatgattattaaccctaattttggaaattgatctaagacaaatgttcaatccataaaattaatgttttggaaattgatctatgtgttttcacttc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40043392 |
aaacaaatgattattaaccctaattttggaaattgatcaaagacaaatgttcaatccataaaattaatgttttggaaattgatctatgtgttttcacttc |
40043293 |
T |
|
| Q |
201 |
tttaatttttaaaaaccagaaaacagtttttaaaaactaaatcaaacaggcccctaatcaccttttaattcctgatttttatccaaagtaatttattttc |
300 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40043292 |
tttaatttttaaaaatcagaaaacagtttttaaaaactaaatcaaacaggtccctaatcaccttttaattcctgatttttatccaaagtaatttattttc |
40043193 |
T |
|
| Q |
301 |
tggtgattcaaactatatacc |
321 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
40043192 |
tggtgattcaaactatatacc |
40043172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 198 - 253
Target Start/End: Original strand, 38227291 - 38227346
Alignment:
| Q |
198 |
ttctttaatttttaaaaaccagaaaacagtttttaaaaactaaatcaaacaggccc |
253 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
38227291 |
ttctttaatttttaaaaaccacaaaacagtttttaaaaactaaatcaaacaggccc |
38227346 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 28402253 - 28402198
Alignment:
| Q |
204 |
aatttttaaaaaccagaaaacagtttttaaaaactaaatcaaacaggcccctaatc |
259 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||||||||||||||||||||| ||||| |
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|
| T |
28402253 |
aatttttaaaaaccaaaaaactgtttttgaaaactaaatcaaacaggcccttaatc |
28402198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 5962102 - 5962054
Alignment:
| Q |
201 |
tttaatttttaaaaaccagaaaacagtttttaaaaactaaatcaaacag |
249 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
5962102 |
tttaatttttaaaaactgaaaaacagtttttgaaaactaaatcaaacag |
5962054 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 253
Target Start/End: Complemental strand, 28162928 - 28162873
Alignment:
| Q |
198 |
ttctttaatttttaaaaaccagaaaacagtttttaaaaactaaatcaaacaggccc |
253 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
28162928 |
ttctttaatttttaaaaacaacaaaacagtttttaaaaactaaatcaaacaggccc |
28162873 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 10677729 - 10677783
Alignment:
| Q |
198 |
ttctttaatttttaaaaaccagaaaacagtttttaaaaactaaatcaaacaggcc |
252 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10677729 |
ttcttaaatttttaaaaaccacaaaacagtttttaaaaactaaatcaaacaggcc |
10677783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 26686127 - 26686175
Alignment:
| Q |
190 |
gttttcacttctttaatttttaaaaaccagaaaacagtttttaaaaacta |
239 |
Q |
| |
|
||||||| || |||||||||| ||||| |||||||||||||||||||||| |
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|
| T |
26686127 |
gttttcaattttttaatttttgaaaac-agaaaacagtttttaaaaacta |
26686175 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 13032769 - 13032821
Alignment:
| Q |
201 |
tttaatttttaaaaaccagaaaacagtttttaaaaactaaatcaaacaggccc |
253 |
Q |
| |
|
|||| ||||||||||| | || |||||||||||||| ||||||||||||||| |
|
|
| T |
13032769 |
tttactttttaaaaactaaaatacagtttttaaaaagcaaatcaaacaggccc |
13032821 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 32022730 - 32022684
Alignment:
| Q |
201 |
tttaatttttaaaaaccagaaaacagtttttaaaaactaaatcaaac |
247 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||| |
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|
| T |
32022730 |
tttaatttttaaaaattaaaaaacagtttttaaaaactaaatcaaac |
32022684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 30063223 - 30063175
Alignment:
| Q |
201 |
tttaatttttaaaaaccagaaaacagtttttaaaaactaaatcaaacag |
249 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
30063223 |
tttaatttttaaaaactgaaaaacagtttttgaaaactaaatcaaacag |
30063175 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 41466204 - 41466156
Alignment:
| Q |
201 |
tttaatttttaaaaaccagaaaacagtttttaaaaactaaatcaaacag |
249 |
Q |
| |
|
||||||||| |||||| | |||||| ||||||||||||||||||||||| |
|
|
| T |
41466204 |
tttaattttaaaaaactacaaaacactttttaaaaactaaatcaaacag |
41466156 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 48514205 - 48514161
Alignment:
| Q |
191 |
ttttcacttctttaatttttaaaaaccagaaaacagtttttaaaaa |
236 |
Q |
| |
|
|||||| || |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48514205 |
ttttcaattttttaatttttaaaaac-agaaaacagtttttaaaaa |
48514161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 3686509 - 3686557
Alignment:
| Q |
201 |
tttaatttttaaaaaccagaaaacagtttttaaaaactaaatcaaacag |
249 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
3686509 |
tttaatttttaaaaattgaaaaacagtttttagaaactaaatcaaacag |
3686557 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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