View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9998_low_2 (Length: 575)
Name: NF9998_low_2
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9998_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 3011558 - 3011498
Alignment:
| Q |
20 |
tgaacatcactccaattgttttcaactcctctttgtactcatttattctatccccatagaa |
80 |
Q |
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| T |
3011558 |
tgaacatcactccaattgttttcaactcctctttgtattcatttattctatccccatagaa |
3011498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 2931209 - 2931269
Alignment:
| Q |
20 |
tgaacatcactccaattgttttcaactcctctttgtactcatttattctatccccatagaa |
80 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||||||| |
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| T |
2931209 |
tgaacataactccaattgttttcaattcctctttgtactcatttattctctctccatagaa |
2931269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 37796713 - 37796770
Alignment:
| Q |
23 |
acatcactccaattgttttcaactcctctttgtactcatttattctatccccatagaa |
80 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
37796713 |
acatcactccaattgttttcaactcctcttcatacttgtttattctatccccatagaa |
37796770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 2921864 - 2921921
Alignment:
| Q |
23 |
acatcactccaattgttttcaactcctctttgtactcatttattctatccccatagaa |
80 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||| ||||||| ||||| |
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| T |
2921864 |
acatcactccaattgttttcaactcctcttcatacttatttattttatccccgtagaa |
2921921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 2931991 - 2932038
Alignment:
| Q |
83 |
ctttctggcataaaaaactggtttgctgcaccatccaaatgttttgttc |
131 |
Q |
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| T |
2931991 |
ctttctggcataaaaaactggtttgctgca-catctaaatgttttgttc |
2932038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 2947868 - 2947922
Alignment:
| Q |
26 |
tcactccaattgttttcaactcctctttgtactcatttattctatccccatagaa |
80 |
Q |
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||||||||| | |||| ||||| ||||||||| |||||||||| ||||||||||| |
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| T |
2947868 |
tcactccaactctttttaactcttctttgtacgcatttattctttccccatagaa |
2947922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 4915620 - 4915561
Alignment:
| Q |
21 |
gaacatcactccaattgttttcaactcctctttgtactcatttattctatccccatagaa |
80 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4915620 |
gaacatcactccaactgttttcaactcctctttgtacttatttattctatccccatagaa |
4915561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 1505873 - 1505813
Alignment:
| Q |
20 |
tgaacatcactccaattgttttcaactcctctttgtactcatttattctatccccatagaa |
80 |
Q |
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||||||| ||||| | | |||||||||| ||| |||||||||||||||||| ||| ||||| |
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| T |
1505873 |
tgaacataactccgactattttcaactcttctgtgtactcatttattctattcccgtagaa |
1505813 |
T |
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