View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9998_low_20 (Length: 336)
Name: NF9998_low_20
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9998_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 12 - 321
Target Start/End: Original strand, 41014117 - 41014426
Alignment:
| Q |
12 |
aaaggaagaacttgacaaacaaaaatgataaagacatgtcacaagtccagaaatatacctcgtagaccataccaagttagaggacatattaaaagttaaa |
111 |
Q |
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| T |
41014117 |
aaaggaacaacttgacaaacaaaaatgataaagacatgtcacaagtccagaaatatacctcgtagaccataccaagttaaaggacatattaaaagttaaa |
41014216 |
T |
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| Q |
112 |
attacactatcaatatgaaagcaagttaaactaatatgtgatgtggtccattgtagtcgagtacctaaaaattgtccaaaaccaataactactaatgatg |
211 |
Q |
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| T |
41014217 |
attacacgatcaatatgaaagcaagttaaactaatatgtgatgtggtccattgtagtcgagtacctaaaaattgtccaaaaccaataactactaatgatg |
41014316 |
T |
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| Q |
212 |
ccctctaaaaatataagacggtgatctaatcctaagaattttccacaaagtggtgatgacggcatagagctatttactcgattgttgcagacattggcag |
311 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41014317 |
ccctttaaaaatataagacggtgatctaatcctaagaattttccacaaagtggtgatgacggcgtagagctatttactcgattgttgcagacattggcag |
41014416 |
T |
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| Q |
312 |
agtaagaaat |
321 |
Q |
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|||||||||| |
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| T |
41014417 |
agtaagaaat |
41014426 |
T |
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