View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9998_low_22 (Length: 323)

Name: NF9998_low_22
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9998_low_22
NF9998_low_22
[»] chr3 (1 HSPs)
chr3 (18-311)||(53175094-53175387)


Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 53175094 - 53175387
Alignment:
Q  18 acctatttggtttactagaataccacgattcttgtggaggattgtagatgaaaatactttgatgttcaagtcaacttttaaagaaatggatgagaggatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53175094 acctatttggtttactagaataccacgattcttgtggaggattgtagatgaaaatactttgatgttcaagtcaacttttaaagaaatggatgagaggatt 53175193  T
Q  118 tcataataaattgtgtgtatctttctacttctgttaatattaacctgtttataaatacagttttaggagaattggtcagaaagttgtagagtttgttgag 217  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53175194 tcataataaattgtgtgtatctttctacttctgttaatattaccctgtttataaatacagttttaggagaattggtcagaaagttgtagagtttgttgag 53175293  T
Q  218 ggaatcctgacatgatttttagatcatatccttatgatgcaacaaaaatgcactgagttgatttgtttaagtgctttgtaacatatgcctctgt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53175294 ggaatcctgacatgatttttagatcatatccttatgatgcaacaaaaatgcactgagttgatttgtttaagtgctttgtaacatatgcctctgt 53175387  T

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