View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9998_low_23 (Length: 283)
Name: NF9998_low_23
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9998_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 39139004 - 39139211
Alignment:
| Q |
1 |
gatgatgataaaacagatgtgaagtgaagtaaagaagctgggtgtgtaatagtgtacatgaatgtgcattaatttacctagcacatcaagaattaaaggt |
100 |
Q |
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| T |
39139004 |
gatgatgataaaacagatgtgaagtgaagtaaagaagctgggtgtgtaatagtgtacatgaatgtgcattaatttacctagcacatcaagaattaaaggt |
39139103 |
T |
|
| Q |
101 |
ggttgttgagcaacgagccacacttgtgttctcttttcatagtgctctctgctctgctcacaagacccaccatctttgaacctcttgctgctcgctgctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39139104 |
ggttgttgagcaacgagccacacttgtgttctcttttcatagtgctctctgctctgctcacaagacccaccatctttgaacctcttgctgctcgctgctc |
39139203 |
T |
|
| Q |
201 |
actaccaa |
208 |
Q |
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|||||||| |
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| T |
39139204 |
actaccaa |
39139211 |
T |
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