View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9998_low_25 (Length: 267)
Name: NF9998_low_25
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9998_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 48171485 - 48171222
Alignment:
| Q |
1 |
tgtgagcctccgttttcgcttcatttcaacgcatttcaactctctattccgtgccaattgttgtataaaagattgattgctaagtgcttttgcaaggaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
48171485 |
tgtgagcctccgttttcgcttcatttcaacgcctttcaactctctattctgtgccaattgttgtataaaagattgattgctgagtgcttttgcaaggaaa |
48171386 |
T |
|
| Q |
101 |
ttcatcatctgttgatgtttcttctcagtaaccaacaacctagcttccatagcagataattgctcccttgaattatgctgctgctgccttaacttcacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48171385 |
ttcatcatctgttgatgtttcttctcagtaaccaacaacctagcttccatagcagataattgctcccttgaattatgctgctgctgccttaacttcacaa |
48171286 |
T |
|
| Q |
201 |
tttcagccatcaaaacagccctatcccttctcaacctctcaatctcaccttcaacaccaaactc |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48171285 |
tttcagccatcaaaacagccctatcccttctcaacctctcaatctcaccttcaagaccaaactc |
48171222 |
T |
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