View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9998_low_28 (Length: 253)
Name: NF9998_low_28
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9998_low_28 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 38411174 - 38410951
Alignment:
| Q |
16 |
aaggtaaacgatgcaaaagaacggcgatcgtttgcatttctgatgaaaggtgaagagagatgacaagttttggtttggagggagaatagaaaataacatt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38411174 |
aaggtaaacgatgcaaaagaacggcgatcgtttgcatttctgatgaaaggtgaag------------ttttggtttggagggagaatagaaaataacatt |
38411087 |
T |
|
| Q |
116 |
tggttactaataaaatgacatttcatttctgcgactatgatatcatacatccttgttggctaacctgaatcagttttagnnnnnnnttggtttttatgaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38411086 |
tggttactaataaaatgacatttcatttctgcgactatgatatcatacatccttgttggctaacctgaatcagttttagaaaaaagttggtttttatgaa |
38410987 |
T |
|
| Q |
216 |
aacggtttttagaaaccaaactgaaccataaatttggt |
253 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
38410986 |
aacggtatttagaaaccaaactg--ccataaatttggt |
38410951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 1884768 - 1884709
Alignment:
| Q |
75 |
atgacaagttttggtttggagggagaatagaaaataacatttggttactaataaaatgac |
134 |
Q |
| |
|
|||| ||||||| ||||||| ||||||| | ||| |||| |||||||||||||||||||| |
|
|
| T |
1884768 |
atgaaaagtttttgtttggatggagaatgggaaacaacacttggttactaataaaatgac |
1884709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University