View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9998_low_29 (Length: 250)
Name: NF9998_low_29
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9998_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 40614257 - 40614021
Alignment:
| Q |
1 |
ttagaatgcgactcctcttatcaatatttccagcatcaatcatgcaagaaagaannnnnnngaagaagggtaaaatgaaatatattaatgctaaatctca |
100 |
Q |
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| T |
40614257 |
ttagaatgcgactcctcttatcaatatttccagcatcaatcatgcaagaaataattttttt----aagggtaaaatgaaatatattaatgctaaatctca |
40614162 |
T |
|
| Q |
101 |
-tctctacagcacaaggtgtatcgagaaagaggatnnnnnnnttatataattgtgttacaaaaaccgcaagagcaaaaccaaggaacgaaacaaaatcag |
199 |
Q |
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| T |
40614161 |
ctctctaccgcacaaggtgtatcgagaaagaggataaaaaaattatataattttgttacaaaaaccgcaagagcaaaaccaaggaacgaaacaaaatcag |
40614062 |
T |
|
| Q |
200 |
catatgcccacatacatcaaaggattaagccatcacctatg |
240 |
Q |
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| T |
40614061 |
catatgcccacatacattaaaggattaagccaccacctatg |
40614021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 40617574 - 40617334
Alignment:
| Q |
1 |
ttagaatgcgactcctcttatcaatatttccagcatcaatcatgcaagaaagaannnnnnngaagaagggtaaaatgaaatatattaatgctaaatctca |
100 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| || |
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| T |
40617574 |
ttagaatgcgactcctctcatcaatatttccagcatcaatcatgcaagaaagattttttttgaagaagggtaaaatgaaatacattactgctaaatcgca |
40617475 |
T |
|
| Q |
101 |
-tctctacagcacaaggtgtatcgagaaagaggatnnnnnnnttatataattgtgttacaaaaaccgcaagagcaaaaccaaggaacgaaacaaaatcag |
199 |
Q |
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| T |
40617474 |
ctctctccaatataaggtgtactgaagaagaggttaaaaaagttatataattgtgttacaaaacccgcaagagcaaaaccaaggagtgaaacaaaatcaa |
40617375 |
T |
|
| Q |
200 |
catatgcccacatacatcaaaggattaagccatcacctatg |
240 |
Q |
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| T |
40617374 |
catatgcccacacacaacaaaaggttaagccaccatctatg |
40617334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 240
Target Start/End: Complemental strand, 12243807 - 12243713
Alignment:
| Q |
146 |
ataattgtgttacaaaaaccgcaagagcaaaaccaaggaacgaaacaaaatcagcatatgcccacatacatcaaaggattaagccatcacctatg |
240 |
Q |
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|||| |||||| |||||||||||||| ||||||||||||| |||||||| ||||| |||||||||| ||| ||| | |||||||| | |||||| |
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| T |
12243807 |
ataaatgtgtttcaaaaaccgcaagaacaaaaccaaggaaagaaacaaagtcagcctatgcccacacacaacaaggagttaagccaccgcctatg |
12243713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 41238349 - 41238405
Alignment:
| Q |
166 |
gcaagagcaaaaccaaggaacgaaacaaaatcagcatatgcccacatacatcaaagg |
222 |
Q |
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|||||| ||||||||||||| ||||||||||||| ||||||| | |||||||||| |
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| T |
41238349 |
gcaagaacaaaaccaaggaaagaaacaaaatcagtctatgcccgtacacatcaaagg |
41238405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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